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CAZyme Information: MGYG000004708_00596

You are here: Home > Sequence: MGYG000004708_00596

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species
Lineage Bacteria; Bacteroidota; Bacteroidia; Bacteroidales; Bacteroidaceae; Prevotella;
CAZyme ID MGYG000004708_00596
CAZy Family PL1
CAZyme Description hypothetical protein
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
947 MGYG000004708_31|CGC1 102084.19 4.8806
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000004708 1820911 MAG China Asia
Gene Location Start: 5001;  End: 7844  Strand: -

Full Sequence      Download help

MKNIYSKLIF  SLMACFIALG  ANAQTWDFFN  SDGWDVDEEN  LMADAANWTY  ESANNRWKST60
AAFNNEELKA  NGQIISITKG  LFFTTDVADR  VRIDAKKRSV  TMNGNGVMIT  IKNLTAGTKI120
TVNCKTSSKT  EARGLNVTNI  TPVSGSFNAT  SNADQVNVGT  VTADGDVTLT  ATGGLYLFKI180
VVGEEETGGG  DPVVPDDYNS  VALNPYKNQM  RLALVNSDIK  YYNTDEVAVA  IDKAAGTVTV240
NPISGTWSDV  FTKTVKNISF  AKAQSTGSEG  EIANGKIKIT  EAKGWKESAY  LKWELYTGAS300
SYNVYVKGGQ  YSEYTKIDAP  LVRQYSDGKG  GFYGRADAVG  LRAASDYALK  VVAVNAEGIE360
MDAASEATGI  TVKAYDRSGF  AFKNNSKGVG  AYKADGTLKD  NAVVLYITKD  NGSTIVWDVN420
GRDSGRSNKG  LGNILAAFEK  NGETRPYVIR  FIGQVTMDKA  QLMGEKGSLQ  LKSKGPGSNT480
FVTFEGIGDD  ATLYEFGITL  YKTDNVEIRN  LAVMLFADDG  IQLKECNNTW  IHNVDFFYGG540
TGGDADQAKG  DGSLDTKDGG  TNNVFSYNHF  WDSGKCSLCG  MKSESGQELE  SYHHNWFDHS600
DSRHPRVRSK  QVHVYNNYYD  GCAKYGVGSV  MGASVFVENN  YFRSTKSPML  ISMQGRDAQG660
GGTFSGEAGG  MIKSFGNIYT  EKGSVGSYTP  ITHKQSATDF  DCYEADSRDE  QVPSSYKTVA720
GGTSYNNFDT  DNSKMYDYTA  DATEEVPAIV  TGFYGAGRMN  HGDFQWVFNN  TTEDTNYGVI780
TALKQALINY  KTKLVKVYGD  VNSGSGGEEP  GGGEEPGGGE  EPGGGDVNPP  VEGTVTCSFE840
GAPSNSAFTV  TGNYASKKEC  TVDGKTYTTG  VKMESLTSIK  FTTTQKMKIT  IYGSTTDSNC900
DIKIDGTKVM  GDISTHTITS  TLEAGAHELT  KQSTNVTVMF  IKLEPAE947

Enzyme Prediction      help

No EC number prediction in MGYG000004708_00596.

CAZyme Signature Domains help

Created with Snap4794142189236284331378426473520568615662710757804852899478645PL1
Family Start End Evalue family coverage
PL1 478 645 3.4e-40 0.8217821782178217

CDD Domains      download full data without filtering help

Created with Snap4794142189236284331378426473520568615662710757804852899482760PelB833935CBM77477642Amb_all475642Pec_lyase_C
Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
COG3866 PelB 5.89e-47 482 760 103 345
Pectate lyase [Carbohydrate transport and metabolism].
pfam18283 CBM77 1.52e-29 833 935 1 103
Carbohydrate binding module 77. This domain is the non-catalytic carbohydrate binding module 77 (CBM77) present in Ruminococcus flavefaciens. CBMs fulfil a critical targeting function in plant cell wall depolymerisation. In CBM77, a cluster of conserved basic residues (Lys1092, Lys1107 and Lys1162) confer calcium-independent recognition of homogalacturonan.
smart00656 Amb_all 4.66e-28 477 642 15 186
Amb_all domain.
pfam00544 Pec_lyase_C 1.50e-14 475 642 31 211
Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue.

CAZyme Hits      help

Created with Snap4794142189236284331378426473520568615662710757804852899279946QUT73893.1|CBM77|PL1210798QCD40816.1|PL1210798QCP73706.1|PL1199945QNT67442.1|CBM77|PL1257793QOR20273.1|PL1
Hit ID E-Value Query Start Query End Hit Start Hit End
QUT73893.1 1.00e-205 279 946 25 684
QCD40816.1 1.10e-205 210 798 1 588
QCP73706.1 1.10e-205 210 798 1 588
QNT67442.1 1.62e-193 199 945 29 775
QOR20273.1 7.28e-169 257 793 28 554

PDB Hits      download full data without filtering help

Created with Snap47941421892362843313784264735205686156627107578048528994827003VMV_A4776421VBL_A4876571AIR_A4876572EWE_A4837593ZSC_A
Hit ID E-Value Query Start Query End Hit Start Hit End Description
3VMV_A 1.53e-16 482 700 81 298
Crystalstructure of pectate lyase Bsp165PelA from Bacillus sp. N165 [Bacillus sp. N16-5],3VMW_A Crystal structure of pectate lyase Bsp165PelA from Bacillus sp. N165 in complex with trigalacturonate [Bacillus sp. N16-5]
1VBL_A 1.53e-13 477 642 131 330
Structureof the thermostable pectate lyase PL 47 [Bacillus sp. TS-47]
1AIR_A 1.31e-11 487 657 94 272
ChainA, PECTATE LYASE C [Dickeya chrysanthemi],1O88_A Chain A, Pectate Lyase C [Dickeya chrysanthemi],1O8D_A Chain A, PECTATE LYASE C [Dickeya chrysanthemi],1O8E_A Chain A, PECTATE LYASE C [Dickeya chrysanthemi],1O8F_A Chain A, PECTATE LYASE C [Dickeya chrysanthemi],1O8G_A Chain A, PECTATE LYASE C [Dickeya chrysanthemi],1O8H_A Chain A, PECTATE LYASE C [Dickeya chrysanthemi],1O8I_A Chain A, PECTATE LYASE C [Dickeya chrysanthemi],1O8J_A Chain A, PECTATE LYASE C [Dickeya chrysanthemi],1O8K_A Chain A, PECTATE LYASE C [Dickeya chrysanthemi],1O8L_A Chain A, PECTATE LYASE C [Dickeya chrysanthemi],1O8M_A Chain A, PECTATE LYASE C [Dickeya chrysanthemi],1PLU_A Chain A, Protein (pectate Lyase C) [Dickeya chrysanthemi],2PEC_A Chain A, PECTATE LYASE C [Dickeya chrysanthemi]
2EWE_A 3.09e-11 487 657 94 272
ChainA, Pectate lyase C [Dickeya chrysanthemi]
3ZSC_A 3.70e-09 483 759 71 331
Catalyticfunction and substrate recognition of the pectate lyase from Thermotoga maritima [Thermotoga maritima]

Swiss-Prot Hits      download full data without filtering help

Created with Snap4794142189236284331378426473520568615662710757804852899482650sp|B1B6T1|PTLY_BACSP482650sp|Q8GCB2|PTLY_BACLI482650sp|Q65DC2|PTLY_BACLD477655sp|Q5AVN4|PLYA_EMENI429691sp|Q60140|PLY_PSEVI
Hit ID E-Value Query Start Query End Hit Start Hit End Description
B1B6T1 9.06e-18 482 650 110 280
Pectate trisaccharide-lyase OS=Bacillus sp. OX=1409 GN=pel PE=1 SV=1
Q8GCB2 9.06e-18 482 650 110 280
Pectate trisaccharide-lyase OS=Bacillus licheniformis OX=1402 GN=pelA PE=1 SV=1
Q65DC2 9.06e-18 482 650 110 280
Pectate trisaccharide-lyase OS=Bacillus licheniformis (strain ATCC 14580 / DSM 13 / JCM 2505 / CCUG 7422 / NBRC 12200 / NCIMB 9375 / NCTC 10341 / NRRL NRS-1264 / Gibson 46) OX=279010 GN=BLi04129 PE=3 SV=1
Q5AVN4 6.34e-16 477 655 97 277
Pectate lyase A OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) OX=227321 GN=plyA PE=1 SV=1
Q60140 2.09e-13 429 691 62 361
Pectate lyase OS=Pseudomonas viridiflava OX=33069 GN=pel PE=3 SV=1

SignalP and Lipop Annotations help

This protein is predicted as SP

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
0.000424 0.998489 0.000492 0.000193 0.000186 0.000176

TMHMM  Annotations      help

There is no transmembrane helices in MGYG000004708_00596.