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CAZyme Information: MGYG000004708_00847

You are here: Home > Sequence: MGYG000004708_00847

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species
Lineage Bacteria; Bacteroidota; Bacteroidia; Bacteroidales; Bacteroidaceae; Prevotella;
CAZyme ID MGYG000004708_00847
CAZy Family GH28
CAZyme Description hypothetical protein
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
467 MGYG000004708_52|CGC1 52134.4 8.2081
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000004708 1820911 MAG China Asia
Gene Location Start: 6936;  End: 8339  Strand: +

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in MGYG000004708_00847.

CAZyme Signature Domains help

Family Start End Evalue family coverage
GH28 80 437 6.3e-75 0.9292307692307692

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
COG5434 Pgu1 2.30e-69 24 366 58 398
Polygalacturonase [Carbohydrate transport and metabolism].
PLN03003 PLN03003 4.36e-16 56 385 26 310
Probable polygalacturonase At3g15720
pfam00295 Glyco_hydro_28 8.23e-15 207 460 85 320
Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes are important in cell wall metabolism.
PLN02793 PLN02793 2.08e-14 52 374 51 343
Probable polygalacturonase
PLN02188 PLN02188 3.50e-11 56 345 39 287
polygalacturonase/glycoside hydrolase family protein

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
ADY35504.1 8.92e-231 26 466 20 460
CAJ19131.1 1.08e-230 36 467 17 448
AND21958.1 4.66e-226 33 466 8 441
AII62903.1 1.04e-225 33 466 30 463
QUT83816.1 1.04e-225 33 466 30 463

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
3JUR_A 3.75e-80 26 398 7 382
Thecrystal structure of a hyperthermoactive Exopolygalacturonase from Thermotoga maritima [Thermotoga maritima],3JUR_B The crystal structure of a hyperthermoactive Exopolygalacturonase from Thermotoga maritima [Thermotoga maritima],3JUR_C The crystal structure of a hyperthermoactive Exopolygalacturonase from Thermotoga maritima [Thermotoga maritima],3JUR_D The crystal structure of a hyperthermoactive Exopolygalacturonase from Thermotoga maritima [Thermotoga maritima]
5OLP_A 1.28e-78 50 443 41 442
Galacturonidase[Bacteroides thetaiotaomicron VPI-5482],5OLP_B Galacturonidase [Bacteroides thetaiotaomicron VPI-5482]

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
A7PZL3 4.80e-36 60 465 69 465
Probable polygalacturonase OS=Vitis vinifera OX=29760 GN=GSVIVT00026920001 PE=1 SV=1
P27644 1.25e-16 210 376 25 196
Polygalacturonase OS=Rhizobium radiobacter OX=358 GN=pgl PE=2 SV=1
Q9LW07 2.96e-16 56 385 26 310
Probable polygalacturonase At3g15720 OS=Arabidopsis thaliana OX=3702 GN=At3g15720 PE=3 SV=1
Q00359 2.74e-11 50 317 49 279
Exopolygalacturonase OS=Cochliobolus carbonum OX=5017 GN=PGX1 PE=3 SV=1
Q94AJ5 2.65e-10 52 427 51 394
Probable polygalacturonase At1g80170 OS=Arabidopsis thaliana OX=3702 GN=At1g80170 PE=1 SV=1

SignalP and Lipop Annotations help

This protein is predicted as SP

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
0.000267 0.999118 0.000157 0.000157 0.000139 0.000139

TMHMM  Annotations      help

There is no transmembrane helices in MGYG000004708_00847.