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CAZyme Information: MGYG000004749_00432
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Basic Information |
Genomic context |
Full Sequence |
Enzyme annotations |
CAZy signature domains |
CDD domains |
CAZyme hits |
PDB hits |
Swiss-Prot hits |
SignalP and Lipop annotations |
TMHMM annotations
Basic Information help
| Species | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Lineage | Bacteria; Proteobacteria; Gammaproteobacteria; Burkholderiales; Burkholderiaceae; Oxalobacter; | |||||||||||
| CAZyme ID | MGYG000004749_00432 | |||||||||||
| CAZy Family | GH153 | |||||||||||
| CAZyme Description | Poly-beta-1,6-N-acetyl-D-glucosamine N-deacetylase | |||||||||||
| CAZyme Property |
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| Genome Property |
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| Gene Location | Start: 21; End: 866 Strand: + | |||||||||||
CAZyme Signature Domains help
| Family | Start | End | Evalue | family coverage |
|---|---|---|---|---|
| GH153 | 1 | 278 | 8.7e-100 | 0.8108882521489972 |
CDD Domains download full data without filtering help
| Cdd ID | Domain | E-Value | qStart | qEnd | sStart | sEnd | Domain Description |
|---|---|---|---|---|---|---|---|
| TIGR03938 | deacetyl_PgaB | 9.27e-115 | 1 | 280 | 334 | 619 | poly-beta-1,6-N-acetyl-D-glucosamine N-deacetylase PgaB. Two well-characterized systems produce polysaccharide based on N-acetyl-D-glucosamine in straight chains with beta-1,6 linkages. These are encoded by the icaADBC operon in Staphylococcus species, where the system is designated polysaccharide intercellular adhesin (PIA), and the pgaABCD operon in Gram-negative bacteria such as E. coli. Both systems include a putative polysaccharide deacetylase. The PgaB protein, described here, contains an additional domain lacking from its Gram-positive counterpart IcaB (TIGR03933). Deacetylation by this protein appears necessary to allow export through the porin PgaA [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides] |
| pfam14883 | GHL13 | 6.05e-112 | 1 | 259 | 60 | 325 | Hypothetical glycosyl hydrolase family 13. GHL13 is a family of hypothetical glycoside hydrolases. |
| PRK14582 | pgaB | 5.05e-96 | 1 | 278 | 377 | 663 | poly-beta-1,6-N-acetyl-D-glucosamine N-deacetylase PgaB. |
| PRK14581 | hmsF | 7.65e-87 | 1 | 279 | 377 | 665 | outer membrane N-deacetylase; Provisional |
CAZyme Hits help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End |
|---|---|---|---|---|---|
| QDX33244.1 | 6.87e-173 | 1 | 281 | 389 | 669 |
| ARQ46010.1 | 6.87e-173 | 1 | 281 | 389 | 669 |
| ARQ78211.1 | 2.54e-172 | 1 | 281 | 431 | 711 |
| ANA35062.1 | 1.06e-82 | 1 | 280 | 374 | 662 |
| ATG22246.1 | 1.06e-82 | 1 | 280 | 374 | 662 |
PDB Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| 6AU1_A | 3.20e-73 | 1 | 280 | 70 | 356 | Structureof the PgaB (BpsB) glycoside hydrolase domain from Bordetella bronchiseptica [Bordetella bronchiseptica RB50],6AU1_B Structure of the PgaB (BpsB) glycoside hydrolase domain from Bordetella bronchiseptica [Bordetella bronchiseptica RB50] |
| 4P7L_A | 4.66e-63 | 1 | 279 | 72 | 360 | Structureof Escherichia coli PgaB C-terminal domain, P212121 crystal form [Escherichia coli K-12],4P7N_A Structure of Escherichia coli PgaB C-terminal domain in complex with glucosamine [Escherichia coli K-12],4P7O_A Structure of Escherichia coli PgaB C-terminal domain, P1 crystal form [Escherichia coli K-12],4P7O_B Structure of Escherichia coli PgaB C-terminal domain, P1 crystal form [Escherichia coli K-12],4P7Q_A Structure of Escherichia coli PgaB C-terminal domain in complex with N-acetylglucosamine [Escherichia coli K-12],4P7R_A Structure of Escherichia coli PgaB C-terminal domain in complex with a poly-beta-1,6-N-acetyl-D-glucosamine (PNAG) hexamer [Escherichia coli K-12] |
| 4F9D_A | 3.35e-57 | 1 | 269 | 340 | 618 | Structureof Escherichia coli PgaB 42-655 in complex with nickel [Escherichia coli K-12],4F9D_B Structure of Escherichia coli PgaB 42-655 in complex with nickel [Escherichia coli K-12] |
| 4F9J_A | 4.90e-55 | 2 | 269 | 341 | 618 | Structureof Escherichia coli PgaB 42-655 in complex with iron [Escherichia coli K-12],4F9J_B Structure of Escherichia coli PgaB 42-655 in complex with iron [Escherichia coli K-12] |
Swiss-Prot Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| P75906 | 1.43e-59 | 1 | 279 | 377 | 665 | Poly-beta-1,6-N-acetyl-D-glucosamine N-deacetylase OS=Escherichia coli (strain K12) OX=83333 GN=pgaB PE=1 SV=1 |
| Q8XAR3 | 1.43e-59 | 1 | 279 | 377 | 665 | Poly-beta-1,6-N-acetyl-D-glucosamine N-deacetylase OS=Escherichia coli O157:H7 OX=83334 GN=pgaB PE=3 SV=1 |
SignalP and Lipop Annotations help
This protein is predicted as OTHER
| Other | SP_Sec_SPI | LIPO_Sec_SPII | TAT_Tat_SPI | TATLIP_Sec_SPII | PILIN_Sec_SPIII |
|---|---|---|---|---|---|
| 1.000050 | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 0.000000 |