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CAZyme Information: MGYG000004762_00567
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Basic Information |
Genomic context |
Full Sequence |
Enzyme annotations |
CAZy signature domains |
CDD domains |
CAZyme hits |
PDB hits |
Swiss-Prot hits |
SignalP and Lipop annotations |
TMHMM annotations
Basic Information help
| Species | Catenibacillus sp900553975 | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Lineage | Bacteria; Firmicutes_A; Clostridia; Lachnospirales; Lachnospiraceae; Catenibacillus; Catenibacillus sp900553975 | |||||||||||
| CAZyme ID | MGYG000004762_00567 | |||||||||||
| CAZy Family | GH39 | |||||||||||
| CAZyme Description | HTH-type transcriptional activator RhaS | |||||||||||
| CAZyme Property |
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| Genome Property |
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| Gene Location | Start: 3986; End: 6469 Strand: - | |||||||||||
CAZyme Signature Domains help
| Family | Start | End | Evalue | family coverage |
|---|---|---|---|---|
| GH39 | 318 | 774 | 4.8e-57 | 0.9860788863109049 |
CDD Domains download full data without filtering help
| Cdd ID | Domain | E-Value | qStart | qEnd | sStart | sEnd | Domain Description |
|---|---|---|---|---|---|---|---|
| pfam01229 | Glyco_hydro_39 | 1.98e-37 | 309 | 678 | 3 | 355 | Glycosyl hydrolases family 39. |
| COG2207 | AraC | 3.65e-28 | 138 | 262 | 1 | 125 | AraC-type DNA-binding domain and AraC-containing proteins [Transcription]. |
| smart00342 | HTH_ARAC | 9.35e-27 | 173 | 255 | 1 | 83 | helix_turn_helix, arabinose operon control protein. |
| pfam12833 | HTH_18 | 1.41e-21 | 180 | 257 | 2 | 80 | Helix-turn-helix domain. |
| COG4753 | YesN | 1.86e-17 | 148 | 257 | 363 | 472 | Two-component response regulator, YesN/AraC family, consists of REC and AraC-type DNA-binding domains [Signal transduction mechanisms, Transcription]. |
CAZyme Hits help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End |
|---|---|---|---|---|---|
| QIB56775.1 | 4.48e-180 | 1 | 819 | 1 | 813 |
| QMW80451.1 | 4.48e-180 | 1 | 819 | 1 | 813 |
| QBE96237.1 | 8.91e-180 | 1 | 819 | 1 | 813 |
| QJU17205.1 | 2.50e-179 | 1 | 819 | 1 | 813 |
| ANU77168.1 | 7.03e-179 | 1 | 819 | 1 | 813 |
PDB Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| 1PX8_A | 9.91e-19 | 318 | 794 | 12 | 453 | Crystalstructure of beta-D-xylosidase from Thermoanaerobacterium saccharolyticum, a family 39 glycoside hydrolase [Thermoanaerobacterium saccharolyticum],1PX8_B Crystal structure of beta-D-xylosidase from Thermoanaerobacterium saccharolyticum, a family 39 glycoside hydrolase [Thermoanaerobacterium saccharolyticum],1UHV_A Crystal structure of beta-D-xylosidase from Thermoanaerobacterium saccharolyticum, a family 39 glycoside hydrolase [Thermoanaerobacterium saccharolyticum],1UHV_B Crystal structure of beta-D-xylosidase from Thermoanaerobacterium saccharolyticum, a family 39 glycoside hydrolase [Thermoanaerobacterium saccharolyticum],1UHV_C Crystal structure of beta-D-xylosidase from Thermoanaerobacterium saccharolyticum, a family 39 glycoside hydrolase [Thermoanaerobacterium saccharolyticum],1UHV_D Crystal structure of beta-D-xylosidase from Thermoanaerobacterium saccharolyticum, a family 39 glycoside hydrolase [Thermoanaerobacterium saccharolyticum] |
| 6UQJ_A | 1.37e-18 | 306 | 819 | 13 | 501 | Crystalstructure of the GH39 enzyme from Xanthomonas axonopodis pv. citri [Xanthomonas citri pv. citri str. 306] |
| 6YYH_A | 3.11e-16 | 360 | 825 | 77 | 508 | Crystalstructure of beta-D-xylosidase from Dictyoglomus thermophilum in ligand-free form [Dictyoglomus thermophilum H-6-12],6YYH_B Crystal structure of beta-D-xylosidase from Dictyoglomus thermophilum in ligand-free form [Dictyoglomus thermophilum H-6-12],6YYI_A Crystal structure of beta-D-xylosidase from Dictyoglomus thermophilum bound to beta-D-xylopyranose [Dictyoglomus thermophilum H-6-12],6YYI_B Crystal structure of beta-D-xylosidase from Dictyoglomus thermophilum bound to beta-D-xylopyranose [Dictyoglomus thermophilum H-6-12] |
| 3OOU_A | 2.14e-07 | 160 | 260 | 8 | 108 | Thestructure of a protein with unkown function from Listeria innocua [Listeria innocua] |
| 1D5Y_A | 9.38e-06 | 163 | 257 | 9 | 103 | CrystalStructure Of The E. Coli Rob Transcription Factor In Complex With Dna [Escherichia coli],1D5Y_B Crystal Structure Of The E. Coli Rob Transcription Factor In Complex With Dna [Escherichia coli],1D5Y_C Crystal Structure Of The E. Coli Rob Transcription Factor In Complex With Dna [Escherichia coli],1D5Y_D Crystal Structure Of The E. Coli Rob Transcription Factor In Complex With Dna [Escherichia coli] |
Swiss-Prot Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| P23552 | 6.57e-27 | 324 | 784 | 24 | 448 | Beta-xylosidase OS=Caldicellulosiruptor saccharolyticus OX=44001 GN=xynB PE=3 SV=1 |
| P36906 | 1.69e-17 | 318 | 794 | 12 | 453 | Beta-xylosidase OS=Thermoanaerobacterium saccharolyticum OX=28896 GN=xynB PE=1 SV=1 |
| O30360 | 2.15e-16 | 318 | 794 | 12 | 453 | Beta-xylosidase OS=Thermoanaerobacterium saccharolyticum (strain DSM 8691 / JW/SL-YS485) OX=1094508 GN=xynB PE=3 SV=1 |
| P54722 | 4.14e-12 | 15 | 264 | 43 | 295 | Uncharacterized HTH-type transcriptional regulator YfiF OS=Bacillus subtilis (strain 168) OX=224308 GN=yfiF PE=4 SV=1 |
| Q05587 | 5.33e-10 | 81 | 263 | 111 | 299 | Regulatory protein PocR OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) OX=99287 GN=pocR PE=1 SV=2 |
SignalP and Lipop Annotations help
This protein is predicted as OTHER
| Other | SP_Sec_SPI | LIPO_Sec_SPII | TAT_Tat_SPI | TATLIP_Sec_SPII | PILIN_Sec_SPIII |
|---|---|---|---|---|---|
| 1.000054 | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 0.000000 |