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CAZyme Information: MGYG000004792_00052

You are here: Home > Sequence: MGYG000004792_00052

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species
Lineage Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Limosilactobacillus;
CAZyme ID MGYG000004792_00052
CAZy Family GH23
CAZyme Description Chromosome partition protein Smc
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
1628 179188.56 10.8812
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000004792 1933522 MAG China Asia
Gene Location Start: 53260;  End: 58146  Strand: -

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in MGYG000004792_00052.

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
cd13402 LT_TF-like 2.40e-22 1416 1541 2 113
lytic transglycosylase-like domain of tail fiber-like proteins and similar domains. These tail fiber-like proteins are multi-domain proteins that include a lytic transglycosylase (LT) domain. Members of the LT family include the soluble and insoluble membrane-bound LTs in bacteria, the LTs in bacteriophage lambda, and the eukaryotic "goose-type" lysozymes (goose egg-white lysozyme; GEWL). LTs catalyze the cleavage of the beta-1,4-glycosidic bond between N-acetylmuramic acid (MurNAc) and N-acetyl-D-glucosamine (GlcNAc), as do "goose-type" lysozymes. However, in addition to this, they also make a new glycosidic bond with the C6 hydroxyl group of the same muramic acid residue.
COG5283 COG5283 1.78e-18 8 1351 9 1162
Phage-related tail protein [Mobilome: prophages, transposons].
COG1196 Smc 1.51e-15 54 345 237 531
Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning].
PRK02224 PRK02224 1.64e-11 55 307 170 424
DNA double-strand break repair Rad50 ATPase.
COG1196 Smc 2.45e-11 53 283 664 894
Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning].

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
QZN93818.1 0.0 1 1627 1 1527
QWS03323.1 0.0 1 1628 1 1544
QDR72456.1 2.69e-298 1 1628 1 1516
AGO00215.1 5.81e-246 1 1628 1 1489
QID95037.1 3.39e-235 1 1628 1 1396

PDB Hits      help

has no PDB hit.

Swiss-Prot Hits      help

has no Swissprot hit.

SignalP and Lipop Annotations help

This protein is predicted as OTHER

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
1.000068 0.000001 0.000000 0.000000 0.000000 0.000000

TMHMM  Annotations      help

There is no transmembrane helices in MGYG000004792_00052.