CAZyme Information: MGYG000004792_01716

Basic Information

• Lineage: Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Limosilactobacillus
• CAZyme ID: MGYG000004792_01716
• CAZy Family: GH78
• CAZyme Description: hypothetical protein

CAZyme Property

Protein Length	CGC	Molecular Weight	Isoelectric Point
608	MGYG000004792_35|CGC1	68369.45	6.5874

Genome Property

Genome Assembly ID	Genome Size	Genome Type	Country	Continent
MGYG000004792	1933522	MAG	China	Asia

• Gene Location: Start: 7239; End: 9065 Strand: +

Full Sequence      

MAATSGWRSTVATEYPLVNLRPQIKMPVRPVCELKPVKLIHAPNGDQILDFGQVLAGVVR
CRINEESGHQVSLEHTEVLDKDGNYFINTKSALGVTEQKDVYIADGQPVTFVPDFTYHGF
RYVRLKGFSKIDLDDFTAIVLSSTGEDLGSFKCSNQLVNQLYHNILWSQQANFFSIPTDC
PQREKAGWTGDVWVYGRTALENANETPLLTEWLENLAADQEENNGIVTFTCPDTSQYHDS
GVKMGKQFGCNGIVNSAGWGDVAIHLPITMYNITDNLAIIRRQYTSMRAWGEYIIRQARQ
RKPGSRLPDKIELHLWNTGFQYGEWLIPSEATDSQDFKQIIANMAHSACYTAPIIGWLSM
VELAKAAQLLHKTGDQVKYQTEADLMKYAIQHGGVIDADGNMPSDLMGAYVMPIVFELVP
AQFKDKFASRLCTILRKNNYRLDTGFLGTPFLLDALCRIGRRDLAYRVLLQEQTPGWVAE
VKRGATTIWESWISYDKDGNPLPTSFNHYANGCVANWMFKDIGGLDQEKTDHGFTQLVFQ
PHVGYGITNAQRTYVTSQGTAKCDWRVRDGHFDIQIEVPANSRARVVLPNGQQHYVGSGH
YHFGCQVK

Enzyme Prediction     

No EC number prediction in MGYG000004792_01716.

CAZyme Signature Domains

Family	Start	End	Evalue	family coverage
GH78	41	588	1.2e-135	0.9940476190476191

CDD Domains     

Cdd ID	Domain	E-Value	qStart	qEnd	sStart	sEnd	Domain Description
pfam17389	Bac_rhamnosid6H	1.89e-92	146	522	1	340	Bacterial alpha-L-rhamnosidase 6 hairpin glycosidase domain. This family consists of bacterial rhamnosidase A and B enzymes. L-Rhamnose is abundant in biomass as a common constituent of glycolipids and glycosides, such as plant pigments, pectic polysaccharides, gums or biosurfactants. Some rhamnosides are important bioactive compounds. For example, terpenyl glycosides, the glycosidic precursor of aromatic terpenoids, act as important flavouring substances in grapes. Other rhamnosides act as cytotoxic rhamnosylated terpenoids, as signal substances in plants or play a role in the antigenicity of pathogenic bacteria.
pfam05592	Bac_rhamnosid	1.02e-23	40	142	1	102	Bacterial alpha-L-rhamnosidase concanavalin-like domain. This family consists of bacterial rhamnosidase A and B enzymes. L-Rhamnose is abundant in biomass as a common constituent of glycolipids and glycosides, such as plant pigments, pectic polysaccharides, gums or biosurfactants. Some rhamnosides are important bioactive compounds. For example, terpenyl glycosides, the glycosidic precursor of aromatic terpenoids, act as important flavouring substances in grapes. Other rhamnosides act as cytotoxic rhamnosylated terpenoids, as signal substances in plants or play a role in the antigenicity of pathogenic bacteria.
pfam17390	Bac_rhamnosid_C	8.87e-17	533	603	8	78	Bacterial alpha-L-rhamnosidase C-terminal domain. This family consists of bacterial rhamnosidase A and B enzymes. L-Rhamnose is abundant in biomass as a common constituent of glycolipids and glycosides, such as plant pigments, pectic polysaccharides, gums or biosurfactants. Some rhamnosides are important bioactive compounds. For example, terpenyl glycosides, the glycosidic precursor of aromatic terpenoids, act as important flavouring substances in grapes. Other rhamnosides act as cytotoxic rhamnosylated terpenoids, as signal substances in plants or play a role in the antigenicity of pathogenic bacteria.

CAZyme Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End
CBL13849.1	1.05e-183	5	603	14	607
APO28640.1	7.82e-164	5	530	287	809
APO28678.1	1.32e-163	5	526	309	827
ARN19579.1	1.08e-150	14	603	285	856
ATU64247.1	1.76e-150	14	603	303	874

PDB Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
3W5M_A	2.68e-83	23	607	475	1018	CrystalStructure of Streptomyces avermitilis alpha-L-rhamnosidase [Streptomyces avermitilis MA-4680 = NBRC 14893],3W5N_A Crystal Structure of Streptomyces avermitilis alpha-L-rhamnosidase complexed with L-rhamnose [Streptomyces avermitilis MA-4680 = NBRC 14893]
6GSZ_A	1.20e-82	4	605	285	867	Crystalstructure of native alfa-L-rhamnosidase from Aspergillus terreus [Aspergillus terreus]
6I60_A	2.90e-66	5	596	322	906	Structureof alpha-L-rhamnosidase from Dictyoglumus thermophilum [Dictyoglomus thermophilum H-6-12],6I60_B Structure of alpha-L-rhamnosidase from Dictyoglumus thermophilum [Dictyoglomus thermophilum H-6-12]

Swiss-Prot Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
Q82PP4	1.26e-82	23	607	475	1018	Alpha-L-rhamnosidase OS=Streptomyces avermitilis (strain ATCC 31267 / DSM 46492 / JCM 5070 / NBRC 14893 / NCIMB 12804 / NRRL 8165 / MA-4680) OX=227882 GN=SAVERM_828 PE=1 SV=1
T2KNB2	5.04e-70	18	608	343	900	Alpha-L-rhamnosidase OS=Formosa agariphila (strain DSM 15362 / KCTC 12365 / LMG 23005 / KMM 3901 / M-2Alg 35-1) OX=1347342 GN=BN863_22090 PE=1 SV=2
P9WF03	1.37e-66	5	589	325	879	Alpha-L-rhamnosidase OS=Alteromonas sp. (strain LOR) OX=1537994 GN=LOR_34 PE=1 SV=1
T2KPL4	3.81e-46	5	588	342	906	Alpha-L-rhamnosidase OS=Formosa agariphila (strain DSM 15362 / KCTC 12365 / LMG 23005 / KMM 3901 / M-2Alg 35-1) OX=1347342 GN=BN863_22170 PE=2 SV=1

SignalP and Lipop Annotations

This protein is predicted as OTHER

Other	SP_Sec_SPI	LIPO_Sec_SPII	TAT_Tat_SPI	TATLIP_Sec_SPII	PILIN_Sec_SPIII
1.000060	0.000000	0.000000	0.000000	0.000000	0.000000

TMHMM  Annotations     

There is no transmembrane helices in MGYG000004792_01716.