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CAZyme Information: MGYG000004840_00765
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Basic Information |
Genomic context |
Full Sequence |
Enzyme annotations |
CAZy signature domains |
CDD domains |
CAZyme hits |
PDB hits |
Swiss-Prot hits |
SignalP and Lipop annotations |
TMHMM annotations
Basic Information help
| Species | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Lineage | Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Limosilactobacillus; | |||||||||||
| CAZyme ID | MGYG000004840_00765 | |||||||||||
| CAZy Family | CBM50 | |||||||||||
| CAZyme Description | hypothetical protein | |||||||||||
| CAZyme Property |
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| Genome Property |
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| Gene Location | Start: 15160; End: 16686 Strand: - | |||||||||||
CDD Domains download full data without filtering help
| Cdd ID | Domain | E-Value | qStart | qEnd | sStart | sEnd | Domain Description |
|---|---|---|---|---|---|---|---|
| pfam00877 | NLPC_P60 | 7.95e-24 | 405 | 501 | 2 | 94 | NlpC/P60 family. The function of this domain is unknown. It is found in several lipoproteins. |
| COG0791 | Spr | 2.30e-18 | 335 | 505 | 15 | 195 | Cell wall-associated hydrolase, NlpC family [Cell wall/membrane/envelope biogenesis]. |
| pfam01476 | LysM | 6.92e-17 | 100 | 141 | 1 | 42 | LysM domain. The LysM (lysin motif) domain is about 40 residues long. It is found in a variety of enzymes involved in bacterial cell wall degradation. This domain may have a general peptidoglycan binding function. The structure of this domain is known. |
| cd00118 | LysM | 3.72e-15 | 100 | 141 | 3 | 45 | Lysin Motif is a small domain involved in binding peptidoglycan. LysM, a small globular domain with approximately 40 amino acids, is a widespread protein module involved in binding peptidoglycan in bacteria and chitin in eukaryotes. The domain was originally identified in enzymes that degrade bacterial cell walls, but proteins involved in many other biological functions also contain this domain. It has been reported that the LysM domain functions as a signal for specific plant-bacteria recognition in bacterial pathogenesis. Many of these enzymes are modular and are composed of catalytic units linked to one or several repeats of LysM domains. LysM domains are found in bacteria and eukaryotes. |
| PRK13914 | PRK13914 | 1.14e-14 | 15 | 487 | 8 | 460 | invasion associated endopeptidase. |
CAZyme Hits help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End |
|---|---|---|---|---|---|
| QFV00796.1 | 1.93e-136 | 1 | 508 | 1 | 472 |
| QZN93730.1 | 2.09e-93 | 1 | 508 | 1 | 469 |
| QDK48906.1 | 2.90e-92 | 3 | 508 | 4 | 477 |
| QKT15619.1 | 4.09e-92 | 3 | 508 | 4 | 477 |
| AMY13470.1 | 4.09e-92 | 3 | 508 | 4 | 477 |
PDB Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| 6B8C_A | 4.93e-22 | 387 | 504 | 26 | 139 | Crystalstructure of NlpC/p60 domain of peptidoglycan hydrolase SagA [Enterococcus faecium] |
| 2MKX_A | 6.85e-11 | 97 | 142 | 4 | 49 | Solutionstructure of LysM the peptidoglycan binding domain of autolysin AtlA from Enterococcus faecalis [Enterococcus faecalis V583] |
| 2K1G_A | 6.44e-10 | 400 | 503 | 14 | 117 | SolutionNMR structure of lipoprotein spr from Escherichia coli K12. Northeast Structural Genomics target ER541-37-162 [Escherichia coli K-12] |
| 4JXB_A | 6.64e-06 | 384 | 481 | 1 | 108 | RipD(Rv1566c) from Mycobacterium tuberculosis: a non-catalytic NlpC/p60 domain protein, adaptation to peptidoglycan-binding function [Mycobacterium tuberculosis H37Rv],4JXB_B RipD (Rv1566c) from Mycobacterium tuberculosis: a non-catalytic NlpC/p60 domain protein, adaptation to peptidoglycan-binding function [Mycobacterium tuberculosis H37Rv] |
| 4LJ1_A | 8.45e-06 | 384 | 481 | 1 | 108 | RipD(Rv1566c) from Mycobacterium tuberculosis: a non-catalytic NlpC/p60 domain protein with two penta-peptide repeat units (PVQQA-PVQPA) [Mycobacterium tuberculosis H37Rv] |
Swiss-Prot Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| P13692 | 2.71e-19 | 387 | 504 | 400 | 513 | Protein P54 OS=Enterococcus faecium OX=1352 PE=3 SV=2 |
| O34669 | 2.10e-18 | 32 | 144 | 23 | 124 | Cell wall-binding protein YocH OS=Bacillus subtilis (strain 168) OX=224308 GN=yocH PE=1 SV=1 |
| P37710 | 4.41e-13 | 39 | 142 | 365 | 473 | Autolysin OS=Enterococcus faecalis (strain ATCC 700802 / V583) OX=226185 GN=EF_0799 PE=1 SV=2 |
| O07532 | 4.85e-11 | 32 | 143 | 24 | 137 | Peptidoglycan endopeptidase LytF OS=Bacillus subtilis (strain 168) OX=224308 GN=lytF PE=1 SV=2 |
| O31852 | 6.84e-11 | 42 | 143 | 95 | 202 | D-gamma-glutamyl-meso-diaminopimelic acid endopeptidase CwlS OS=Bacillus subtilis (strain 168) OX=224308 GN=cwlS PE=1 SV=1 |
SignalP and Lipop Annotations help
This protein is predicted as SP
| Other | SP_Sec_SPI | LIPO_Sec_SPII | TAT_Tat_SPI | TATLIP_Sec_SPII | PILIN_Sec_SPIII |
|---|---|---|---|---|---|
| 0.000269 | 0.999097 | 0.000147 | 0.000196 | 0.000155 | 0.000134 |