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CAZyme Information: MGYG000004849_00748

You are here: Home > Sequence: MGYG000004849_00748

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species
Lineage Bacteria; Firmicutes_A; Clostridia; Oscillospirales; Ruminococcaceae; UMGS1826;
CAZyme ID MGYG000004849_00748
CAZy Family GH39
CAZyme Description hypothetical protein
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
497 MGYG000004849_17|CGC2 57182.27 5.1554
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000004849 3246607 MAG China Asia
Gene Location Start: 28478;  End: 29971  Strand: +

Full Sequence      Download help

MRCIQVDALK  EKGPFDSFFR  TCVGAGRAAE  VARKASLDQL  REVHEQCGFT  YLRFHGLLHD60
EMAVYQEDTS  GAPVYNWQYV  DMVYDEILAC  GMKPFVELSY  MPEKLASGTQ  HLFWWNANVT120
PPKDYTRWGE  LIRALTAHWT  ARYGREEVRT  WLFEVWNEPN  HPSFFSGTQE  EYFRLYEVTA180
KAVKSVCGEY  KVGGPASAGS  AWVPELIEYC  YCNQIPLDFV  STHTYSVQSG  HFDEFGDQEL240
FIHQDTDLVS  KDVRMVAEQV  RQSPMPCLPV  HYTEWSSSYS  ARDASHDSYI  QASFILYQLK300
RIQGNAASMS  YWTFSDIFEE  TGVPLAPFHG  GFGLMNLQGL  RKPSFYAYQY  LNRLGPEEIQ360
NPDPDSFACK  SENGVQVLLW  EYHRPKQDVC  NREYFTRDLR  PKALEPVSLK  ITGLAPGRYR420
MRLYQVGYGV  NDVYHDFTEA  HFTDLPTQEE  TAKLKKQTSG  EAVRSESIQI  GPNGTYERLL480
PMREYDCFLL  ELSSETT497

Enzyme Prediction      help

EC 3.2.1.37

CAZyme Signature Domains help

Created with Snap2449749912414917319822324827329832334737239742244747212399GH39
Family Start End Evalue family coverage
GH39 12 399 3.9e-148 0.9048723897911833

CDD Domains      download full data without filtering help

Created with Snap244974991241491731982232482732983233473723974224474724366Glyco_hydro_3933494XynB106225agarase_cat
Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
pfam01229 Glyco_hydro_39 9.21e-119 4 366 3 362
Glycosyl hydrolases family 39.
COG3664 XynB 9.03e-79 33 494 3 426
Beta-xylosidase [Carbohydrate transport and metabolism].
cd21510 agarase_cat 1.24e-05 106 225 50 187
alpha-beta barrel catalytic domain of agarase, such as GH86-like endo-acting agarases identified in non-marine organisms. Typically, agarases (E.C. 3.2.1.81) are found in ocean-dwelling bacteria since agarose is a principle component of red algae cell wall polysaccharides. Agarose is a linear polymer of alternating D-galactose and 3,6-anhydro-L-galactopyranose. Endo-acting agarases, such as glycoside hydrolase 16 (GH16) and GH86 hydrolyze internal beta-1,4 linkages. GH86-like endo-acting agarase of this protein family has been identified in the human intestinal bacterium Bacteroides uniformis. This acquired metabolic pathway, as demonstrated by the prevalence of agar-specific genetic cluster called polysaccharide utilization loci (PULs), varies considerably between human populations, being much more prevalent in a Japanese sample than in North America, European, or Chinese samples. Agarase activity was also identified in the non-marine bacterium Cellvibrio sp.

CAZyme Hits      help

Created with Snap244974991241491731982232482732983233473723974224474722492AYL95527.1|GH392492QEM02490.1|GH392492QTE53865.1|GH392492QTE48767.1|GH392492QTE66680.1|GH39
Hit ID E-Value Query Start Query End Hit Start Hit End
AYL95527.1 4.80e-182 2 492 33 526
QEM02490.1 2.95e-180 2 492 31 524
QTE53865.1 2.95e-180 2 492 31 524
QTE48767.1 2.95e-180 2 492 31 524
QTE66680.1 2.95e-180 2 492 31 524

PDB Hits      download full data without filtering help

Created with Snap2449749912414917319822324827329832334737239742244747224924M29_A24924EKJ_A24926UQJ_A153931W91_A153932BS9_A
Hit ID E-Value Query Start Query End Hit Start Hit End Description
4M29_A 8.48e-138 2 492 9 496
Structureof a GH39 Beta-xylosidase from Caulobacter crescentus [Caulobacter vibrioides CB15]
4EKJ_A 1.70e-137 2 492 9 496
ChainA, Beta-xylosidase [Caulobacter vibrioides]
6UQJ_A 2.63e-130 2 492 14 503
Crystalstructure of the GH39 enzyme from Xanthomonas axonopodis pv. citri [Xanthomonas citri pv. citri str. 306]
1W91_A 4.08e-104 15 393 14 397
crystalstructure of 1,4-BETA-D-XYLAN XYLOHYDROLASE solve using anomalous signal from Seleniomethionine [synthetic construct],1W91_B crystal structure of 1,4-BETA-D-XYLAN XYLOHYDROLASE solve using anomalous signal from Seleniomethionine [synthetic construct],1W91_C crystal structure of 1,4-BETA-D-XYLAN XYLOHYDROLASE solve using anomalous signal from Seleniomethionine [synthetic construct],1W91_D crystal structure of 1,4-BETA-D-XYLAN XYLOHYDROLASE solve using anomalous signal from Seleniomethionine [synthetic construct],1W91_E crystal structure of 1,4-BETA-D-XYLAN XYLOHYDROLASE solve using anomalous signal from Seleniomethionine [synthetic construct],1W91_F crystal structure of 1,4-BETA-D-XYLAN XYLOHYDROLASE solve using anomalous signal from Seleniomethionine [synthetic construct],1W91_G crystal structure of 1,4-BETA-D-XYLAN XYLOHYDROLASE solve using anomalous signal from Seleniomethionine [synthetic construct],1W91_H crystal structure of 1,4-BETA-D-XYLAN XYLOHYDROLASE solve using anomalous signal from Seleniomethionine [synthetic construct]
2BS9_A 4.08e-104 15 393 14 397
Nativecrystal structure of a GH39 beta-xylosidase XynB1 from Geobacillus stearothermophilus [Geobacillus stearothermophilus],2BS9_B Native crystal structure of a GH39 beta-xylosidase XynB1 from Geobacillus stearothermophilus [Geobacillus stearothermophilus],2BS9_C Native crystal structure of a GH39 beta-xylosidase XynB1 from Geobacillus stearothermophilus [Geobacillus stearothermophilus],2BS9_D Native crystal structure of a GH39 beta-xylosidase XynB1 from Geobacillus stearothermophilus [Geobacillus stearothermophilus],2BS9_E Native crystal structure of a GH39 beta-xylosidase XynB1 from Geobacillus stearothermophilus [Geobacillus stearothermophilus],2BS9_F Native crystal structure of a GH39 beta-xylosidase XynB1 from Geobacillus stearothermophilus [Geobacillus stearothermophilus],2BS9_G Native crystal structure of a GH39 beta-xylosidase XynB1 from Geobacillus stearothermophilus [Geobacillus stearothermophilus],2BS9_H Native crystal structure of a GH39 beta-xylosidase XynB1 from Geobacillus stearothermophilus [Geobacillus stearothermophilus]

Swiss-Prot Hits      download full data without filtering help

Created with Snap2449749912414917319822324827329832334737239742244747215393sp|Q9ZFM2|XYNB_GEOSE4385sp|P23552|XYNB_CALSA15394sp|O30360|XYNB_THESW15394sp|P36906|XYNB_THESA118225sp|T2KM23|PLH31_FORAG
Hit ID E-Value Query Start Query End Hit Start Hit End Description
Q9ZFM2 2.07e-104 15 393 14 399
Beta-xylosidase OS=Geobacillus stearothermophilus OX=1422 GN=xynB PE=1 SV=1
P23552 6.18e-99 4 385 9 393
Beta-xylosidase OS=Caldicellulosiruptor saccharolyticus OX=44001 GN=xynB PE=3 SV=1
O30360 1.23e-98 15 394 14 397
Beta-xylosidase OS=Thermoanaerobacterium saccharolyticum (strain DSM 8691 / JW/SL-YS485) OX=1094508 GN=xynB PE=3 SV=1
P36906 2.72e-97 15 394 14 397
Beta-xylosidase OS=Thermoanaerobacterium saccharolyticum OX=28896 GN=xynB PE=1 SV=1
T2KM23 2.51e-10 118 225 159 269
Alpha-1,4-L-rhamnosidase OS=Formosa agariphila (strain DSM 15362 / KCTC 12365 / LMG 23005 / KMM 3901 / M-2Alg 35-1) OX=1347342 GN=BN863_22200 PE=2 SV=1

SignalP and Lipop Annotations help

This protein is predicted as OTHER

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
1.000083 0.000000 0.000000 0.000000 0.000000 0.000000

TMHMM  Annotations      help

There is no transmembrane helices in MGYG000004849_00748.