CAZyme Information: MGYG000004872_01814

Basic Information

• Species: Stoquefichus sp001244545
• Lineage: Bacteria; Firmicutes; Bacilli; Erysipelotrichales; Erysipelatoclostridiaceae; Stoquefichus; Stoquefichus sp001244545
• CAZyme ID: MGYG000004872_01814
• CAZy Family: GH78
• CAZyme Description: hypothetical protein

CAZyme Property

Protein Length	CGC	Molecular Weight	Isoelectric Point
748	MGYG000004872_8|CGC3	86934.84	5.2608

Genome Property

Genome Assembly ID	Genome Size	Genome Type	Country	Continent
MGYG000004872	3555940	MAG	Sweden	Europe

• Gene Location: Start: 144680; End: 146926 Strand: +

Full Sequence      

MKDNYQFLGQWIKGHDQDYGENDALYYQDHRNTIVFKQFSIEHLETTYLYIATLGYSIVY
INGQRITEDELNLVWTQFQKCVYYDVYDVTSYLKVGQNEIQIELGNGMYNPAPLRLFGKY
NLREKLKEIGEPRVLCDLIQNDRVILSSDASWFMKEGQFLFNNLYLGEKVDFRPYTSQIE
NVCIDETKRHMERNTIPPIKRMQTVTFQHYILSDEGLIVDFGEMISGFINLTFQAEAHQH
VVLQYSENFQDGQMDYHTCLAGSVGERIQDMVIPGGPGAPTMGIQKDEIIACQGKNVYTN
TFTYHSFRYVLIQGLKKEDIISLSATYVHTDLQQIGKIKTDNPIFNELYEAAMRTKLNNV
HSTFEDCARERLGYGGDMVALATSHLYIFDLEEFYKKIIKDFRFEQTENGGIPETAPYMG
IQSNGTGEGEGPILWQLVYPYLTYKHYQYYGDRRVLEEEYPYLQKQMKYLLKYDLEKLVH
CCLGDHGSLLIAGQFRKPTPDKLFLGYCTILLFLKYNIFIGRILHQDISPYQKRYDEIES
KIIHQFQNEDGTFGEGSQTGFAFAIALKLASPELLCQKFVRKIESDQGIFNSGIFGMALT
YEVLNRYGCNEVIENWLLQESDVGFLAMLKTGNKALAELFVGEQLSLNHAMFASYQQWYY
QGLAGIQIDEEAVGFHKIRLSPYFSKKVQHVECSIQTKQGMIQSSWQRKNHEIIWTINVP
EHIQYEIILHQDYQKVDNDNQVMIYIQE

Enzyme Prediction     

No EC number prediction in MGYG000004872_01814.

CAZyme Signature Domains

Family	Start	End	Evalue	family coverage
GH78	214	729	2.8e-103	0.9880952380952381

CDD Domains     

Cdd ID	Domain	E-Value	qStart	qEnd	sStart	sEnd	Domain Description
pfam17389	Bac_rhamnosid6H	3.76e-44	334	663	2	340	Bacterial alpha-L-rhamnosidase 6 hairpin glycosidase domain. This family consists of bacterial rhamnosidase A and B enzymes. L-Rhamnose is abundant in biomass as a common constituent of glycolipids and glycosides, such as plant pigments, pectic polysaccharides, gums or biosurfactants. Some rhamnosides are important bioactive compounds. For example, terpenyl glycosides, the glycosidic precursor of aromatic terpenoids, act as important flavouring substances in grapes. Other rhamnosides act as cytotoxic rhamnosylated terpenoids, as signal substances in plants or play a role in the antigenicity of pathogenic bacteria.
pfam08531	Bac_rhamnosid_N	6.78e-25	49	203	8	172	Alpha-L-rhamnosidase N-terminal domain. This family consists of bacterial rhamnosidase A and B enzymes. This domain is probably involved in substrate recognition.
pfam05592	Bac_rhamnosid	1.72e-06	212	318	3	90	Bacterial alpha-L-rhamnosidase concanavalin-like domain. This family consists of bacterial rhamnosidase A and B enzymes. L-Rhamnose is abundant in biomass as a common constituent of glycolipids and glycosides, such as plant pigments, pectic polysaccharides, gums or biosurfactants. Some rhamnosides are important bioactive compounds. For example, terpenyl glycosides, the glycosidic precursor of aromatic terpenoids, act as important flavouring substances in grapes. Other rhamnosides act as cytotoxic rhamnosylated terpenoids, as signal substances in plants or play a role in the antigenicity of pathogenic bacteria.
pfam17390	Bac_rhamnosid_C	0.003	668	721	2	55	Bacterial alpha-L-rhamnosidase C-terminal domain. This family consists of bacterial rhamnosidase A and B enzymes. L-Rhamnose is abundant in biomass as a common constituent of glycolipids and glycosides, such as plant pigments, pectic polysaccharides, gums or biosurfactants. Some rhamnosides are important bioactive compounds. For example, terpenyl glycosides, the glycosidic precursor of aromatic terpenoids, act as important flavouring substances in grapes. Other rhamnosides act as cytotoxic rhamnosylated terpenoids, as signal substances in plants or play a role in the antigenicity of pathogenic bacteria.

CAZyme Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End
QQV04787.1	0.0	2	744	3	749
QQY28243.1	0.0	2	744	3	749
AUI71217.1	1.74e-244	7	727	10	732
CBL51046.1	1.78e-213	7	727	4	726
AGF56675.1	1.85e-210	7	746	99	865

PDB Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
6I60_A	3.06e-52	37	727	181	896	Structureof alpha-L-rhamnosidase from Dictyoglumus thermophilum [Dictyoglomus thermophilum H-6-12],6I60_B Structure of alpha-L-rhamnosidase from Dictyoglumus thermophilum [Dictyoglomus thermophilum H-6-12]
3W5M_A	9.49e-41	49	733	321	998	CrystalStructure of Streptomyces avermitilis alpha-L-rhamnosidase [Streptomyces avermitilis MA-4680 = NBRC 14893],3W5N_A Crystal Structure of Streptomyces avermitilis alpha-L-rhamnosidase complexed with L-rhamnose [Streptomyces avermitilis MA-4680 = NBRC 14893]

Swiss-Prot Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
T2KPL4	1.46e-53	42	731	195	908	Alpha-L-rhamnosidase OS=Formosa agariphila (strain DSM 15362 / KCTC 12365 / LMG 23005 / KMM 3901 / M-2Alg 35-1) OX=1347342 GN=BN863_22170 PE=2 SV=1
P9WF03	3.14e-41	38	740	176	889	Alpha-L-rhamnosidase OS=Alteromonas sp. (strain LOR) OX=1537994 GN=LOR_34 PE=1 SV=1
Q82PP4	5.10e-40	49	733	321	998	Alpha-L-rhamnosidase OS=Streptomyces avermitilis (strain ATCC 31267 / DSM 46492 / JCM 5070 / NBRC 14893 / NCIMB 12804 / NRRL 8165 / MA-4680) OX=227882 GN=SAVERM_828 PE=1 SV=1
T2KNB2	6.65e-29	30	740	172	892	Alpha-L-rhamnosidase OS=Formosa agariphila (strain DSM 15362 / KCTC 12365 / LMG 23005 / KMM 3901 / M-2Alg 35-1) OX=1347342 GN=BN863_22090 PE=1 SV=2

SignalP and Lipop Annotations

This protein is predicted as OTHER

Other	SP_Sec_SPI	LIPO_Sec_SPII	TAT_Tat_SPI	TATLIP_Sec_SPII	PILIN_Sec_SPIII
1.000014	0.000017	0.000000	0.000000	0.000000	0.000000

TMHMM  Annotations     

There is no transmembrane helices in MGYG000004872_01814.