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CAZyme Information: MGYG000004883_01466

You are here: Home > Sequence: MGYG000004883_01466

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Rothia mucilaginosa_B
Lineage Bacteria; Actinobacteriota; Actinomycetia; Actinomycetales; Micrococcaceae; Rothia; Rothia mucilaginosa_B
CAZyme ID MGYG000004883_01466
CAZy Family CBM50
CAZyme Description hypothetical protein
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
353 MGYG000004883_39|CGC1 35841 4.2241
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000004883 2241611 MAG China Asia
Gene Location Start: 3279;  End: 4340  Strand: +

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in MGYG000004883_01466.

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
PRK11198 PRK11198 8.18e-10 292 349 98 147
LysM domain/BON superfamily protein; Provisional
cd00118 LysM 6.08e-09 291 347 2 45
Lysin Motif is a small domain involved in binding peptidoglycan. LysM, a small globular domain with approximately 40 amino acids, is a widespread protein module involved in binding peptidoglycan in bacteria and chitin in eukaryotes. The domain was originally identified in enzymes that degrade bacterial cell walls, but proteins involved in many other biological functions also contain this domain. It has been reported that the LysM domain functions as a signal for specific plant-bacteria recognition in bacterial pathogenesis. Many of these enzymes are modular and are composed of catalytic units linked to one or several repeats of LysM domains. LysM domains are found in bacteria and eukaryotes.
smart00257 LysM 8.58e-07 292 347 2 44
Lysin motif.
pfam01476 LysM 1.13e-06 292 348 1 43
LysM domain. The LysM (lysin motif) domain is about 40 residues long. It is found in a variety of enzymes involved in bacterial cell wall degradation. This domain may have a general peptidoglycan binding function. The structure of this domain is known.
COG1652 XkdP 4.60e-06 254 350 171 264
Nucleoid-associated protein YgaU, contains BON and LysM domains [Function unknown].

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
BAS20589.1 2.93e-169 1 353 1 346
QXW98223.1 4.65e-162 1 353 1 320
ATF63722.1 4.93e-158 1 353 1 305
VEJ29802.1 1.50e-13 50 350 2 341
VEI23440.1 1.35e-12 59 348 11 258

PDB Hits      help

has no PDB hit.

Swiss-Prot Hits      help

has no Swissprot hit.

SignalP and Lipop Annotations help

This protein is predicted as OTHER

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
0.999211 0.000814 0.000005 0.000004 0.000003 0.000005

TMHMM  Annotations      download full data without filtering help

start end
26 48
60 82
97 119
149 171