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CAZyme Information: MGYG000004884_01740

You are here: Home > Sequence: MGYG000004884_01740

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species
Lineage Bacteria; Firmicutes_A; Clostridia; Lachnospirales; Lachnospiraceae; KLE1615;
CAZyme ID MGYG000004884_01740
CAZy Family GH28
CAZyme Description hypothetical protein
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
876 MGYG000004884_222|CGC1 97213.11 4.5141
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000004884 2896455 MAG China Asia
Gene Location Start: 129;  End: 2759  Strand: +

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in MGYG000004884_01740.

CAZyme Signature Domains help

Family Start End Evalue family coverage
GH28 55 373 4.7e-31 0.7446153846153846

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
COG5434 Pgu1 6.65e-34 6 402 66 434
Polygalacturonase [Carbohydrate transport and metabolism].
pfam05345 He_PIG 8.37e-05 803 863 21 81
Putative Ig domain. This alignment represents the conserved core region of ~90 residue repeat found in several haemagglutinins and other cell surface proteins. Sequence similarities to (pfam02494) and (pfam00801) suggest an Ig-like fold (personal obs:C. Yeats). So this family may be similar in function to the (pfam02639) and (pfam02638) domains. This domain is also found in the WisP family of proteins of Tropheryma whipplei.

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
BCJ93914.1 0.0 1 875 1 882
CBL02329.1 1.94e-305 4 875 45 899
AXB28928.1 3.59e-305 4 875 63 917
AHG93184.1 9.48e-96 23 674 35 505
QFU88426.1 3.19e-95 23 679 8 480

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
4MXN_A 4.99e-08 23 255 22 215
Crystalstructure of a putative glycosyl hydrolase (PARMER_00599) from Parabacteroides merdae ATCC 43184 at 1.95 A resolution [Parabacteroides merdae ATCC 43184],4MXN_B Crystal structure of a putative glycosyl hydrolase (PARMER_00599) from Parabacteroides merdae ATCC 43184 at 1.95 A resolution [Parabacteroides merdae ATCC 43184],4MXN_C Crystal structure of a putative glycosyl hydrolase (PARMER_00599) from Parabacteroides merdae ATCC 43184 at 1.95 A resolution [Parabacteroides merdae ATCC 43184],4MXN_D Crystal structure of a putative glycosyl hydrolase (PARMER_00599) from Parabacteroides merdae ATCC 43184 at 1.95 A resolution [Parabacteroides merdae ATCC 43184]
5OLP_A 3.12e-06 20 286 42 300
Galacturonidase[Bacteroides thetaiotaomicron VPI-5482],5OLP_B Galacturonidase [Bacteroides thetaiotaomicron VPI-5482]

Swiss-Prot Hits      help

has no Swissprot hit.

SignalP and Lipop Annotations help

This protein is predicted as OTHER

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
1.000039 0.000002 0.000000 0.000000 0.000000 0.000000

TMHMM  Annotations      help

There is no transmembrane helices in MGYG000004884_01740.