dbCAN-seq: a database of CAZyme sequence and annotation

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CAZyme Information: MGYG000004904_01601

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Basic Information help

Species

Lineage

Bacteria; Firmicutes_A; Clostridia; TANB77; CAG-508; CAG-492;

CAZyme ID

MGYG000004904_01601

CAZy Family

GT84

CAZyme Description

Cyclic beta-(1,2)-glucan synthase NdvB

CAZyme Property

Protein Length	CGC	Molecular Weight	Isoelectric Point
734		85619.89	6.0001

Genome Property

Genome Assembly ID	Genome Size	Genome Type	Country	Continent
MGYG000004904	1830533	MAG	Spain	Europe

Gene Location

Start: 52001; End: 54205 Strand: -

Full Sequence Download help

Enzyme Prediction help

No EC number prediction in MGYG000004904_01601.

CAZyme Signature Domains help

Family	Start	End	Evalue	family coverage
GT84	6	104	1.5e-31	0.4558139534883721

CDD Domains download full data without filtering help

Cdd ID	Domain	E-Value	qStart	qEnd	sStart	sEnd	Domain Description
cd11753	GH94N_ChvB_NdvB_2_like	3.69e-81	96	428	1	336	Second GH94N domain of cyclic beta 1-2 glucan synthetase and similar domains. The glycoside hydrolase family 94 (previously known as glycosyltransferase family 36) includes cyclic beta 1-2 glucan synthetase (EC:2.4.1.20) or ChvB (encoded by the chromosomal chvB virulence gene). This second of two tandemly repeated GH94-N-terminal-like domains has not been characterized functionally. Some beta 1-2 glucan synthetases are annotated as NdvB (nodule development B) gene products, glycosyltransferases required for the synthesis of cyclic beta-(1,2)-glucans, which play a role in interactions between bacteria and plants.
pfam06165	Glyco_transf_36	2.94e-61	154	400	2	246	Glycosyltransferase family 36. The glycosyltransferase family 36 includes cellobiose phosphorylase (EC:2.4.1.20), cellodextrin phosphorylase (EC:2.4.1.49), chitobiose phosphorylase (EC:2.4.1.-). Many members of this family contain two copies of this domain.
cd11756	GH94N_ChvB_NdvB_1_like	5.09e-34	634	724	1	91	First GH94N domain of cyclic beta 1-2 glucan synthetase and similar domains. The glycoside hydrolase family 94 (previously known as glycosyltransferase family 36) includes cyclic beta 1-2 glucan synthetase (EC:2.4.1.20) or ChvB (encoded by the chromosomal chvB virulence gene). This first of two tandemly repeated GH94-N-terminal-like domains has not been characterized functionally. Some beta 1-2 glucan synthetases are annotated as NdvB (nodule development B) gene products, glycosyltransferases required for the synthesis of cyclic beta-(1,2)-glucans, which play a role in interactions between bacteria and plants.
COG3459	COG3459	7.66e-34	342	725	1	356	Cellobiose phosphorylase [Carbohydrate transport and metabolism].
pfam06165	Glyco_transf_36	1.48e-20	662	725	1	64	Glycosyltransferase family 36. The glycosyltransferase family 36 includes cellobiose phosphorylase (EC:2.4.1.20), cellodextrin phosphorylase (EC:2.4.1.49), chitobiose phosphorylase (EC:2.4.1.-). Many members of this family contain two copies of this domain.

CAZyme Hits help

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End
AUG57227.1	7.40e-155	7	724	1489	2203
ADU74104.1	1.37e-154	7	725	1501	2215
ANV75789.1	1.37e-154	7	725	1501	2215
ABN52453.1	1.37e-154	7	725	1501	2215
ALX08042.1	1.37e-154	7	725	1501	2215

PDB Hits help

has no PDB hit.

Swiss-Prot Hits download full data without filtering help

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
P20471	9.57e-75	7	717	1411	2128	Cyclic beta-(1,2)-glucan synthase NdvB OS=Rhizobium meliloti (strain 1021) OX=266834 GN=ndvB PE=1 SV=2

SignalP and Lipop Annotations help

This protein is predicted as OTHER

Other	SP_Sec_SPI	LIPO_Sec_SPII	TAT_Tat_SPI	TATLIP_Sec_SPII	PILIN_Sec_SPIII
1.000074	0.000000	0.000000	0.000000	0.000000	0.000000

TMHMM Annotations help

There is no transmembrane helices in MGYG000004904_01601.