cellulose
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Cellulose is well kown as structural polysaccharide of the plant cell wall, consisting of linear glucan chains linked by β-1,4-glycosidic bonds at different polymerization degree. It can also be secreted from bacteria for biofilm formation.
References
Crawford, R. L. (1981). Lignin biodegradation and transformation. New York: John Wiley and Sons. ISBN 978-0-471-05743-7.
Updegraff D. M. (1969). "Semimicro determination of cellulose in biological materials". Analytical Biochemistry. 32 (3): 420–424. doi:10.1016/S0003-2697(69)80009-6
Romeo, T. (2008). Bacterial biofilms (pp. 258–263). Berlin: Springer.
CAZyme Gene Cluster:
| Substrate | Genome_ID | CGC_ID | CGC_Content | Species Name |
|---|---|---|---|---|
| cellulose | MGYG000000190 | MGYG000000190_1|CGC9 |
CBM2|GH5_1|3.2.1.4|GH5,CBM79|GH9|CBM3,null,1.A.22.1.4,Pribosyltran,2.A.40.2.1
|
CAG-127 sp900319515 |
| cellulose | MGYG000000478 | MGYG000000478_19|CGC1 |
1.C.109.1.5,GH94,3.A.1.1.34,3.A.1.1.36,null,LacI,GH94
|
UBA4951 sp900540385 |
| cellulose | MGYG000001021 | MGYG000001021_19|CGC1 |
CBM2|3.2.1.4|CBM4|GH9,3.2.1.4|GH9|CBM79,null,2.A.49.9.3,1.A.16.5.2
|
Ruminococcus_C sp000980705 |
| cellulose | MGYG000001151 | MGYG000001151_114|CGC1 |
CBM37|CBM2|GH5|GH5_1,CBM2|GH5|GH5_1|CBM3,null,3.A.1.132.3
|
Ruminococcus_C sp000433635 |
| cellulose | MGYG000001451 | MGYG000001451_1|CGC43 |
CBM3|GH48,CBM2|CBM3|GH9,HTH_AraC+HTH_AraC,dCache_1+HATPase_c,3.A.1.1.28,3.A.1.1.20,3.A.1.1.45,null,2.A.1.65.8,CE7,2.A.1.3.33
|
Paenibacillus_A antibioticophila |
| cellulose | MGYG000001514 | MGYG000001514_12|CGC42 |
GH48|CBM3,GH9|CBM2|CBM3,null,1.A.22.1.3
|
Paenibacillus_A ihumii |
| cellulose | MGYG000001518 | MGYG000001518_7|CGC25 |
2.A.85.5.1,null,null,CBM3|GH48,CBM2|GH9|CBM3
|
Gorillibacterium timonense |
| cellulose | MGYG000001542 | MGYG000001542_33|CGC2 |
GH48|CBM3,CBM3|GH9|CBM2,MCPsignal,1.A.22.1.1
|
Paenibacillus_A sp900069005 |
| cellulose | MGYG000001940 | MGYG000001940_4|CGC2 |
3.A.1.25.5,3.2.1.4|CBM4|GH9|CBM2,3.2.1.4|CBM3|GH9|CBM2,null,SBP_bac_1,9.B.18.1.2
|
Ruminococcus sp002438605 |
| cellulose | MGYG000001988 | MGYG000001988_8|CGC2 |
3.A.11.3.1,null,CBM4|GH16_3|GH16,3.A.1.1.48,3.A.1.1.4,null,HTH_AraC+HTH_AraC,GH94,GH94,GH94
|
Marvinbryantia sp900550755 |
| cellulose | MGYG000002274 | MGYG000002274_2|CGC4 |
GH94,GH94,GGDEF,GGDEF,1.A.33.1.4,null,3.A.1.135.7,3.A.1.135.5,3.A.1.135.9
|
Faecalibacterium prausnitzii_I |
| cellulose | MGYG000002274 | MGYG000002274_8|CGC1 |
GH1,3.A.1.1.48,3.A.1.1.4,null,LacI,GH94,GH94
|
Faecalibacterium prausnitzii_I |
| cellulose | MGYG000002295 | MGYG000002295_1|CGC2 |
CBM2|CBM4|3.2.1.4|GH9,GH9|CBM79,null,2.A.49.9.3,1.A.16.5.2
|
Ruminococcus_C callidus |
| cellulose | MGYG000002381 | MGYG000002381_20|CGC6 |
GT2,4.D.3.1.6,GH8,1.B.55.3.1,GH8,2.A.40.7.6,3.A.1.120.6
|
Stenotrophomonas bentonitica_A |
| cellulose | MGYG000002414 | MGYG000002414_1|CGC95 |
GH48|CBM3,GH9|CBM2|CBM3,3.A.1.5.32,3.A.1.5.32,3.A.1.5.32,3.A.1.5.10,3.A.1.5.32
|
Paenibacillus odorifer |
| cellulose | MGYG000002531 | MGYG000002531_1|CGC22 |
GH5_1|GH5|CBM2,GH9|CBM3|CBM2,GH5|GH5_4|CBM2,3.A.1.122.2,null,null,3.A.1.122.2
|
Pseudobutyrivibrio fibrisolvens_A |
| cellulose | MGYG000003072 | MGYG000003072_26|CGC3 |
GH51,HTH_5,null,CBM3|GH48,CBM3|GH9|CBM2,MCPsignal,9.B.105.1.3,null,9.B.97.1.5
|
Paenibacillus amylolyticus |
| cellulose | MGYG000003359 | MGYG000003359_22|CGC1 |
CBM2|GH9|CBM3,GH48|CBM3,3.A.1.3.20,3.A.1.3.20,3.A.1.3.20,null,3.A.4.1.2
|
Paenibacillus_A sp900766135 |
| cellulose | MGYG000003769 | MGYG000003769_4|CGC3 |
CBM77|PL1|PL9_1|PL9,CBM2|CBM3|GH9,GH48|CBM2|CBM3|3.2.1.176,CE2,GH36,GH2,2.A.5.5.2
|
|
| cellulose | MGYG000004275 | MGYG000004275_18|CGC1 |
1.A.16.5.1,1.A.43.1.5,null,CBM79|GH9,3.2.1.4|GH9|CBM4
|
Ruminococcus_C sp000437175 |