PlantCAZyme

Basic Information
Species	Ricinus communis
Cazyme ID	28082.m000056
Family	GH53
Protein Properties	Length: 343 Molecular Weight: 37686.3 Isoelectric Point: 8.3426
Chromosome	Chromosome/Scaffold: 28082 Start: 208 End: 1239
Description
View CDS

External Links
NCBI Taxonomy
Plaza
CAZyDB

Signature Domain Download full data set without filtering

Family	Start	End	Evalue
GH53	42	322	0
NGADVGWVTQQESSHYSWYNGSGVKTDPFVLLKNLNINAVRLRVWVNPSGGWCDGKDVLYKAQRAKAQGQRIMVDFHYSDTWADPGHQTKPAAWSNHGIS QLYTDVYSHTTGILNYLKSNGITVDWVQVGNEINGGMLWPEGSTSNFSQLAQLINSGYNGVKAVYPNAPVIVHVANGYDGAKVQWFFDSLRNNGGKFDMV GLSHYPPANNWSSYNSQLDQTMHNIVNRYNKPVVISEVGMDWTQAATAKAMLTDVIAKVKFLGSYGAGVFYWEPEAYPGWQ

Full Sequence
Protein Sequence Length: 343 Download
MAQHFITTTG DYMRTTIRVM RTLALTAGLL TGAISQAATF ANGADVGWVT QQESSHYSWY 60 NGSGVKTDPF VLLKNLNINA VRLRVWVNPS GGWCDGKDVL YKAQRAKAQG QRIMVDFHYS 120 DTWADPGHQT KPAAWSNHGI SQLYTDVYSH TTGILNYLKS NGITVDWVQV GNEINGGMLW 180 PEGSTSNFSQ LAQLINSGYN GVKAVYPNAP VIVHVANGYD GAKVQWFFDS LRNNGGKFDM 240 VGLSHYPPAN NWSSYNSQLD QTMHNIVNRY NKPVVISEVG MDWTQAATAK AMLTDVIAKV 300 KFLGSYGAGV FYWEPEAYPG WQGYTLGATD SGGKFTAAMS AFQ

Full Sequence

Protein Sequence Length: 343 Download

MAQHFITTTG DYMRTTIRVM RTLALTAGLL TGAISQAATF ANGADVGWVT QQESSHYSWY    60
NGSGVKTDPF VLLKNLNINA VRLRVWVNPS GGWCDGKDVL YKAQRAKAQG QRIMVDFHYS    120
DTWADPGHQT KPAAWSNHGI SQLYTDVYSH TTGILNYLKS NGITVDWVQV GNEINGGMLW    180
PEGSTSNFSQ LAQLINSGYN GVKAVYPNAP VIVHVANGYD GAKVQWFFDS LRNNGGKFDM    240
VGLSHYPPAN NWSSYNSQLD QTMHNIVNRY NKPVVISEVG MDWTQAATAK AMLTDVIAKV    300
KFLGSYGAGV FYWEPEAYPG WQGYTLGATD SGGKFTAAMS AFQ 

Functional Domains Download unfiltered results here

Cdd ID	Domain	E-Value	Start	End	Length	Domain Description
COG3867	COG3867	2.0e-83	37	319	314	+ Arabinogalactan endo-1,4-beta-galactosidase [Carbohydrate transport and metabolism]
pfam07745	Glyco_hydro_53	4.0e-124	41	342	335	+ Glycosyl hydrolase family 53. This domain belongs to family 53 of the glycosyl hydrolase classification. These enzymes are enzymes are endo-1,4- beta-galactanases (EC:3.2.1.89). The structure of this domain is known and has a TIM barrel fold.

Gene Ontology
GO Term	Description
GO:0015926	glucosidase activity

Annotations - NR Download unfiltered results here
Source	Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
GenBank	EFF45334.1	0	12	342	4	333	arabinogalactan endo-1,4-beta-galactosidase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122]
RefSeq	NP_638970.1	0	16	342	5	333	arabinogalactan endo-1,4-beta-galactosidase [Xanthomonas campestris pv. campestris str. ATCC 33913]
RefSeq	NP_640928.1	0	12	342	4	333	arabinogalactan endo-1,4-beta-galactosidase [Xanthomonas axonopodis pv. citri str. 306]
RefSeq	XP_002535419.1	0	1	343	1	343	Arabinogalactan endo-1,4-beta-galactosidase, putative [Ricinus communis]
RefSeq	YP_001902009.1	0	16	342	5	333	exported arabinogalactan endo-1,4-beta-galactosidase [Xanthomonas campestris pv. campestris str. B100]

Annotations - PDB Download unfiltered results here
Source	Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
PDB	1fob_A	3.9937e-43	43	315	6	299	A Chain A, Crystal Structure Of A Beta-Galactosidase From Bacteroides Thetaiotaomicron
PDB	1fhl_A	3.9937e-43	43	315	6	299	A Chain A, Crystal Structure Of Beta-1,4-Galactanase From Aspergillus Aculeatus At 293k
PDB	2j74_B	5e-40	40	319	24	326	A Chain A, Crystal Structure Of Beta-1,4-Galactanase From Aspergillus Aculeatus At 293k
PDB	2j74_A	5e-40	40	319	24	326	A Chain A, Crystal Structure Of Beta-1,4-Galactanase From Aspergillus Aculeatus At 293k
PDB	2ccr_B	5e-40	40	319	24	326	A Chain A, Crystal Structure Of Beta-1,4-Galactanase From Aspergillus Aculeatus At 293k

EST Download unfiltered results here

Hit	Length	Start	End	EValue
FG046094	222	37	247	2e-28
FG052350	222	37	247	3e-28
FG008089	222	37	247	7e-28
CN204445	168	43	207	6e-25
CF843252	189	100	278	2e-24

Orthologous Group
Species	ID
Physcomitrella patens	Pp1s298_46V6.1	Pp1s52_71V6.1
Ricinus communis	35859.m000017

CAZyme Information