| Basic Information | |
|---|---|
| Species | Ricinus communis |
| Cazyme ID | 35859.m000017 |
| Family | GH53 |
| Protein Properties | Length: 212 Molecular Weight: 23893.7 Isoelectric Point: 6.8005 |
| Chromosome | Chromosome/Scaffold: 35859 Start: 529 End: 1164 |
| Description | |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| GH53 | 12 | 206 | 0 |
| VKGADVGWLAQMEASGYRFHNSQGQQEDCLRILKDYGINTIRLRTWVNPSDDPASGHNSKAETVAMAVRAQKLGMRIMIDFHYSDSWADPQQQRKPAAWV GHDFPQLLRDVYSYTHDVMSALKQAGVTPEWVQVGNETPTGMIYPEGHTDNWPQLAQLINQGHDAIKAVSPSSKVVLHLDRGNESQRFRTWFDNA | |||
| Full Sequence |
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| Protein Sequence Length: 212 Download |
| MAAAAAHADP FVKGADVGWL AQMEASGYRF HNSQGQQEDC LRILKDYGIN TIRLRTWVNP 60 SDDPASGHNS KAETVAMAVR AQKLGMRIMI DFHYSDSWAD PQQQRKPAAW VGHDFPQLLR 120 DVYSYTHDVM SALKQAGVTP EWVQVGNETP TGMIYPEGHT DNWPQLAQLI NQGHDAIKAV 180 SPSSKVVLHL DRGNESQRFR TWFDNAPRPW RE |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG3867 | COG3867 | 5.0e-78 | 8 | 204 | 201 | + Arabinogalactan endo-1,4-beta-galactosidase [Carbohydrate transport and metabolism] | ||
| pfam07745 | Glyco_hydro_53 | 2.0e-87 | 13 | 206 | 194 | + Glycosyl hydrolase family 53. This domain belongs to family 53 of the glycosyl hydrolase classification. These enzymes are enzymes are endo-1,4- beta-galactanases (EC:3.2.1.89). The structure of this domain is known and has a TIM barrel fold. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0015926 | glucosidase activity |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| RefSeq | XP_002538346.1 | 0 | 1 | 212 | 1 | 212 | Arabinogalactan endo-1,4-beta-galactosidase, putative [Ricinus communis] |
| RefSeq | YP_001037824.1 | 0 | 8 | 204 | 31 | 224 | glycosyl hydrolase 53 [Clostridium thermocellum ATCC 27405] |
| RefSeq | YP_002506447.1 | 0 | 8 | 204 | 112 | 309 | glycosyl hydrolase 53 domain protein [Clostridium cellulolyticum H10] |
| RefSeq | YP_003391216.1 | 0 | 1 | 206 | 20 | 225 | Arabinogalactan endo-1,4-beta-galactosidase [Spirosoma linguale DSM 74] |
| RefSeq | ZP_04525454.1 | 0 | 8 | 204 | 33 | 226 | glycosyl hydrolase 53 [Clostridium butyricum E4 str. BoNT E BL5262] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 2j74_B | 2e-36 | 11 | 199 | 24 | 212 | A Chain A, Structure Of The Retaining Glycosyltransferase Msha: The First Step In Mycothiol Biosynthesis. Organism: Corynebacterium Glutamicum- Apo (Open) Structure. |
| PDB | 2j74_A | 2e-36 | 11 | 199 | 24 | 212 | A Chain A, Structure Of The Retaining Glycosyltransferase Msha: The First Step In Mycothiol Biosynthesis. Organism: Corynebacterium Glutamicum- Apo (Open) Structure. |
| PDB | 2ccr_B | 2e-36 | 11 | 199 | 24 | 212 | A Chain A, Structure Of The Retaining Glycosyltransferase Msha: The First Step In Mycothiol Biosynthesis. Organism: Corynebacterium Glutamicum- Apo (Open) Structure. |
| PDB | 2ccr_A | 2e-36 | 11 | 199 | 24 | 212 | A Chain A, Structure Of The Retaining Glycosyltransferase Msha: The First Step In Mycothiol Biosynthesis. Organism: Corynebacterium Glutamicum- Apo (Open) Structure. |
| PDB | 1ur4_B | 2e-36 | 11 | 199 | 24 | 212 | A Chain A, Structure Of The Retaining Glycosyltransferase Msha: The First Step In Mycothiol Biosynthesis. Organism: Corynebacterium Glutamicum- Apo (Open) Structure. |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
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| Hit | Length | Start | End | EValue |
| CN204445 | 172 | 14 | 182 | 2e-22 |
| CV969482 | 163 | 1 | 162 | 4e-19 |
| CV910565 | 158 | 1 | 157 | 4e-19 |
| CV897729 | 163 | 1 | 162 | 5e-19 |
| FG008089 | 190 | 11 | 193 | 7e-19 |
| Orthologous Group | |||||
|---|---|---|---|---|---|
| Species | ID | ||||
| Physcomitrella patens | Pp1s298_46V6.1 | Pp1s52_71V6.1 | |||
| Ricinus communis | 28082.m000056 | ||||
| Sequence Alignments (This image is cropped. Click for full image.) |
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| Phylogeny |
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