PlantCAZyme

Basic Information
Species	Physcomitrella patens
Cazyme ID	Pp1s52_71V6.1
Family	GH53
Protein Properties	Length: 351 Molecular Weight: 38648.3 Isoelectric Point: 7.2457
Chromosome	Chromosome/Scaffold: 52 Start: 832867 End: 834683
Description
View CDS

External Links
NCBI Taxonomy
Plaza
CAZyDB

Signature Domain Download full data set without filtering

Family	Start	End	Evalue
GH53	9	316	0
LGHDLSTVLQCEKSGVKYYDFDSSECKPPEQIVAAHGANLVRLRLWVNPPAGFSDYASVLEMAKRAKKANLKVLLCLHLSDYWADPGKQFTPGAWANQDC KTLCKTVEEYVRYIIEALQRQGTPPFIVAVGNEVSNGILWPTGALSNISQFTSLLKSGLAAVKEKGIASMVHINNGQDKDLVTWFMGMMVANHVSFNYLG LSFYPADGAKLSDLKSSLETAATRYNKPMVVVEVAESWAPSPNCPETQESLMTELLKVVSSVPRGLGAGVCYWESAWVPPGEAYPGEGCHYGYRALWNEQ GRPLPALR

Full Sequence
Protein Sequence Length: 351 Download
MATIGGMLLG HDLSTVLQCE KSGVKYYDFD SSECKPPEQI VAAHGANLVR LRLWVNPPAG 60 FSDYASVLEM AKRAKKANLK VLLCLHLSDY WADPGKQFTP GAWANQDCKT LCKTVEEYVR 120 YIIEALQRQG TPPFIVAVGN EVSNGILWPT GALSNISQFT SLLKSGLAAV KEKGIASMVH 180 INNGQDKDLV TWFMGMMVAN HVSFNYLGLS FYPADGAKLS DLKSSLETAA TRYNKPMVVV 240 EVAESWAPSP NCPETQESLM TELLKVVSSV PRGLGAGVCY WESAWVPPGE AYPGEGCHYG 300 YRALWNEQGR PLPALRCYEF YAKGPLQPTM HTRRHHFWGL GRSHEGKDEL * 360

Full Sequence

Protein Sequence Length: 351 Download

MATIGGMLLG HDLSTVLQCE KSGVKYYDFD SSECKPPEQI VAAHGANLVR LRLWVNPPAG    60
FSDYASVLEM AKRAKKANLK VLLCLHLSDY WADPGKQFTP GAWANQDCKT LCKTVEEYVR    120
YIIEALQRQG TPPFIVAVGN EVSNGILWPT GALSNISQFT SLLKSGLAAV KEKGIASMVH    180
INNGQDKDLV TWFMGMMVAN HVSFNYLGLS FYPADGAKLS DLKSSLETAA TRYNKPMVVV    240
EVAESWAPSP NCPETQESLM TELLKVVSSV PRGLGAGVCY WESAWVPPGE AYPGEGCHYG    300
YRALWNEQGR PLPALRCYEF YAKGPLQPTM HTRRHHFWGL GRSHEGKDEL *             360

Functional Domains Download unfiltered results here

Cdd ID	Domain	E-Value	Start	End	Length	Domain Description
COG3867	COG3867	6.0e-74	10	328	361	+ Arabinogalactan endo-1,4-beta-galactosidase [Carbohydrate transport and metabolism]
pfam07745	Glyco_hydro_53	2.0e-91	9	315	330	+ Glycosyl hydrolase family 53. This domain belongs to family 53 of the glycosyl hydrolase classification. These enzymes are enzymes are endo-1,4- beta-galactanases (EC:3.2.1.89). The structure of this domain is known and has a TIM barrel fold.

Gene Ontology
GO Term	Description
GO:0015926	glucosidase activity

Annotations - NR Download unfiltered results here
Source	Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
RefSeq	XP_001762057.1	0	10	286	1	277	predicted protein [Physcomitrella patens subsp. patens]
RefSeq	XP_001781259.1	0	1	285	4	287	predicted protein [Physcomitrella patens subsp. patens]
RefSeq	YP_001245138.1	0	7	320	35	383	arabinogalactan endo-1,4-beta-galactosidase [Thermotoga petrophila RKU-1]
RefSeq	YP_001739636.1	0	7	320	29	377	arabinogalactan endo-1,4-beta-galactosidase [Thermotoga sp. RQ2]
RefSeq	ZP_06412227.1	0	10	315	49	381	Arabinogalactan endo-1,4-beta-galactosidase [Frankia sp. EUN1f]

Annotations - PDB Download unfiltered results here
Source	Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
PDB	1fob_A	0	10	297	6	311	A Chain A, Crystal Structure Of Human Glcat-S Apo Form
PDB	1fhl_A	0	10	297	6	311	A Chain A, Crystal Structure Of Beta-1,4-Galactanase From Aspergillus Aculeatus At 293k
PDB	1hju_D	4.2039e-45	10	319	6	330	A Chain A, Crystal Structure Of Beta-1,4-Galactanase From Aspergillus Aculeatus At 293k
PDB	1hju_C	4.2039e-45	10	319	6	330	A Chain A, Crystal Structure Of Beta-1,4-Galactanase From Aspergillus Aculeatus At 293k
PDB	1hju_B	4.2039e-45	10	319	6	330	A Chain A, Crystal Structure Of Beta-1,4-Galactanase From Aspergillus Aculeatus At 293k

EST Download unfiltered results here

Hit	Length	Start	End	EValue
CN204445	207	3	209	0
BY980116	101	1	101	0
BY986948	71	1	71	2e-34
CF843252	198	59	242	1e-28
CN204445	44	172	215	0.000003

Orthologous Group
Species	ID
Physcomitrella patens	Pp1s298_46V6.1
Ricinus communis	28082.m000056	35859.m000017

CAZyme Information