PlantCAZyme

Basic Information
Species	Physcomitrella patens
Cazyme ID	Pp1s298_46V6.1
Family	GH53
Protein Properties	Length: 364 Molecular Weight: 39526.5 Isoelectric Point: 4.4663
Chromosome	Chromosome/Scaffold: 298 Start: 349956 End: 351749
Description
View CDS

External Links
NCBI Taxonomy
Plaza
CAZyDB

Signature Domain Download full data set without filtering

Family	Start	End	Evalue
GH53	10	318	0
LGHDLSTVLQCEKKGLKYYDFNSNYSKPPEQIVADHGANFIRLRLWVNPPAGFSDLSSVFEMAKRAKKANLNILLCLHLSDYWADPGKQYTPAVWADQDF DTLRKTVADYVASTVGALQSQGTPPSMVAVGNEISNGMLWPTGSLSYTSQFTALLKSGLAAVDNDIATMVHINNGQDEGLVTWFMDLMVADDVSFDFLGL SFYPGDGALLSDLETSLAKAASRYNKPMIIAEVADYWIPAPNNPGTQESSLDALLQVVTALPRGLGAGVCYWESAWRSPAEAYPGEGNSYWTRALWNDLG NPLPALRCF

Full Sequence
Protein Sequence Length: 364 Download
MVAKSGVMLL GHDLSTVLQC EKKGLKYYDF NSNYSKPPEQ IVADHGANFI RLRLWVNPPA 60 GFSDLSSVFE MAKRAKKANL NILLCLHLSD YWADPGKQYT PAVWADQDFD TLRKTVADYV 120 ASTVGALQSQ GTPPSMVAVG NEISNGMLWP TGSLSYTSQF TALLKSGLAA VDNDIATMVH 180 INNGQDEGLV TWFMDLMVAD DVSFDFLGLS FYPGDGALLS DLETSLAKAA SRYNKPMIIA 240 EVADYWIPAP NNPGTQESSL DALLQVVTAL PRGLGAGVCY WESAWRSPAE AYPGEGNSYW 300 TRALWNDLGN PLPALRCFEH YSQARVASAE LTMQPDHGPS ELEPTIAQAQ STGAQLSNET 360 KDL*

Full Sequence

Protein Sequence Length: 364 Download

MVAKSGVMLL GHDLSTVLQC EKKGLKYYDF NSNYSKPPEQ IVADHGANFI RLRLWVNPPA    60
GFSDLSSVFE MAKRAKKANL NILLCLHLSD YWADPGKQYT PAVWADQDFD TLRKTVADYV    120
ASTVGALQSQ GTPPSMVAVG NEISNGMLWP TGSLSYTSQF TALLKSGLAA VDNDIATMVH    180
INNGQDEGLV TWFMDLMVAD DVSFDFLGLS FYPGDGALLS DLETSLAKAA SRYNKPMIIA    240
EVADYWIPAP NNPGTQESSL DALLQVVTAL PRGLGAGVCY WESAWRSPAE AYPGEGNSYW    300
TRALWNDLGN PLPALRCFEH YSQARVASAE LTMQPDHGPS ELEPTIAQAQ STGAQLSNET    360
KDL* 

Functional Domains Download unfiltered results here

Cdd ID	Domain	E-Value	Start	End	Length	Domain Description
COG3867	COG3867	1.0e-68	11	318	351	+ Arabinogalactan endo-1,4-beta-galactosidase [Carbohydrate transport and metabolism]
pfam07745	Glyco_hydro_53	4.0e-86	10	318	333	+ Glycosyl hydrolase family 53. This domain belongs to family 53 of the glycosyl hydrolase classification. These enzymes are enzymes are endo-1,4- beta-galactanases (EC:3.2.1.89). The structure of this domain is known and has a TIM barrel fold.

Gene Ontology
GO Term	Description
GO:0015926	glucosidase activity

Annotations - NR Download unfiltered results here
Source	Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
RefSeq	XP_001762057.1	0	11	285	1	276	predicted protein [Physcomitrella patens subsp. patens]
RefSeq	XP_001781259.1	0	1	285	3	287	predicted protein [Physcomitrella patens subsp. patens]
RefSeq	ZP_05805873.1	0	5	320	177	518	Arabinogalactan endo-1,4-beta-galactosidase [Streptomyces flavogriseus ATCC 33331]
RefSeq	ZP_06271000.1	0	5	320	178	519	Arabinogalactan endo-1,4-beta-galactosidase [Streptomyces sp. ACTE]
RefSeq	ZP_06412227.1	0	11	315	49	381	Arabinogalactan endo-1,4-beta-galactosidase [Frankia sp. EUN1f]

Annotations - PDB Download unfiltered results here
Source	Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
PDB	1fob_A	0	11	285	6	301	A Chain A, Crystal Structure Of A Glycosyltransferase Involved In The Glycosylation Of The Major Capsid Of Pbcv-1
PDB	1fhl_A	0	11	285	6	301	A Chain A, Crystal Structure Of Beta-1,4-Galactanase From Aspergillus Aculeatus At 293k
PDB	1hju_D	6e-39	11	320	6	331	A Chain A, Crystal Structure Of Beta-1,4-Galactanase From Aspergillus Aculeatus At 293k
PDB	1hju_C	6e-39	11	320	6	331	A Chain A, Crystal Structure Of Beta-1,4-Galactanase From Aspergillus Aculeatus At 293k
PDB	1hju_B	6e-39	11	320	6	331	A Chain A, Crystal Structure Of Beta-1,4-Galactanase From Aspergillus Aculeatus At 293k

EST Download unfiltered results here

Hit	Length	Start	End	EValue
CN204445	164	8	171	0
BY980116	102	1	102	0
CF843252	200	60	242	5e-26
FG052350	242	5	228	3e-25
CN204445	51	165	215	0.000000001

Orthologous Group
Species	ID
Physcomitrella patens	Pp1s52_71V6.1
Ricinus communis	28082.m000056	35859.m000017

CAZyme Information