Basic Information | |
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Species | Ricinus communis |
Cazyme ID | 29739.m003664 |
Family | CBM43 |
Protein Properties | Length: 502 Molecular Weight: 54885.8 Isoelectric Point: 7.1618 |
Chromosome | Chromosome/Scaffold: 29739 Start: 622371 End: 624164 |
Description | O-Glycosyl hydrolases family 17 protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CBM43 | 380 | 461 | 1.6e-23 |
WCIMSPDASLTDPNLPGSLSYACSYADCTSLGFGSSCGGLDARNNASYAFNMYYQTMDQRKGSCSFNNLSVVTTLDPSQDTC | |||
GH17 | 43 | 360 | 0 |
ACNWGAQTTHPLQPSIVVQLLKDNGFDKVKLFEAEPGPLKALGHSGIQVMVGIPNDLLAPLASSVQAAVNWVQQNVSNYISKYGVDIRYVAVGNEPFLKT YKDSFLQTTFPALQNIQAALIKAGLGKQVKVTVPLNADVYQTDTGLPSGGDFRADIHDLMISIVKFLSDNNCPLTINIYPFLSLNSDPNFPKEYAFFNGT AAPVVDGSIPYTNVFEANFDTLISALEKNGFGSMPVIIGEVGWPTDGDPSANAAYAQRFYLGLLDRIFQGKGTPKRRTPPDVYLFSLLDEDNKSVQPGNF ERHWGVFTFDGTIKYQLN |
Full Sequence |
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Protein Sequence Length: 502 Download |
MEPSKPFKFH MKRLNMGHGY MLGFLLLCLI GGEHLVKGVR GLACNWGAQT THPLQPSIVV 60 QLLKDNGFDK VKLFEAEPGP LKALGHSGIQ VMVGIPNDLL APLASSVQAA VNWVQQNVSN 120 YISKYGVDIR YVAVGNEPFL KTYKDSFLQT TFPALQNIQA ALIKAGLGKQ VKVTVPLNAD 180 VYQTDTGLPS GGDFRADIHD LMISIVKFLS DNNCPLTINI YPFLSLNSDP NFPKEYAFFN 240 GTAAPVVDGS IPYTNVFEAN FDTLISALEK NGFGSMPVII GEVGWPTDGD PSANAAYAQR 300 FYLGLLDRIF QGKGTPKRRT PPDVYLFSLL DEDNKSVQPG NFERHWGVFT FDGTIKYQLN 360 MGNGKSLVPA KGVRYLAREW CIMSPDASLT DPNLPGSLSY ACSYADCTSL GFGSSCGGLD 420 ARNNASYAFN MYYQTMDQRK GSCSFNNLSV VTTLDPSQDT CRFEIMIDLG KHEIPRKSLA 480 GRNQNSTVGL ILALLSIIYG AL |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG5309 | COG5309 | 3.0e-5 | 274 | 352 | 86 | + Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism] | ||
pfam07983 | X8 | 2.0e-14 | 380 | 448 | 76 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. | ||
smart00768 | X8 | 2.0e-29 | 380 | 463 | 86 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. | ||
pfam00332 | Glyco_hydro_17 | 1.0e-64 | 56 | 360 | 307 | + Glycosyl hydrolases family 17. |
Gene Ontology | |
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GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CBI27737.1 | 0 | 41 | 502 | 24 | 486 | unnamed protein product [Vitis vinifera] |
RefSeq | NP_197587.1 | 0 | 18 | 499 | 4 | 499 | glycosyl hydrolase family 17 protein [Arabidopsis thaliana] |
RefSeq | XP_002277217.1 | 0 | 43 | 502 | 18 | 478 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002309443.1 | 0 | 41 | 465 | 1 | 425 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002516181.1 | 0 | 1 | 502 | 1 | 502 | Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1ghr_A | 0 | 57 | 349 | 16 | 294 | B Chain B, Reassembly And Co-Crystallization Of A Family 9 Processive Endoglucanase From Separately Expressed Gh9 And Cbm3c Modules |
PDB | 1aq0_B | 0 | 57 | 349 | 16 | 294 | A Chain A, Barley 1,3-1,4-Beta-Glucanase In Monoclinic Space Group |
PDB | 1aq0_A | 0 | 57 | 349 | 16 | 294 | A Chain A, Barley 1,3-1,4-Beta-Glucanase In Monoclinic Space Group |
PDB | 3f55_D | 8.40779e-45 | 57 | 361 | 17 | 315 | A Chain A, Barley 1,3-1,4-Beta-Glucanase In Monoclinic Space Group |
PDB | 3f55_C | 8.40779e-45 | 57 | 361 | 17 | 315 | A Chain A, Barley 1,3-1,4-Beta-Glucanase In Monoclinic Space Group |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
HO797198 | 428 | 41 | 467 | 0 |
DT763058 | 284 | 134 | 413 | 0 |
AM721378 | 299 | 130 | 427 | 0 |
DT549821 | 277 | 16 | 292 | 0 |
EY783741 | 278 | 137 | 412 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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