| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra026232 |
| Family | CBM43 |
| Protein Properties | Length: 477 Molecular Weight: 52077.3 Isoelectric Point: 6.1728 |
| Chromosome | Chromosome/Scaffold: 01 Start: 10491623 End: 10493179 |
| Description | O-Glycosyl hydrolases family 17 protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| CBM43 | 357 | 436 | 3.6e-27 |
| WCVAHPEKDMTQVTDHLRLACSQADCTTLNDGGSCSQLGEKDNISYAFNSYYQLQMQNEKSCDFDGLGMVTFLDPSVGDC | |||
| GH17 | 23 | 336 | 0 |
| IGVNWGTLSFHKLRPSTVVDLLKANKITKVKLFDSNPDALRALMGTGIQVMISIPNELLSTFSSDLFVQQNLSRFMGKGGADIRYVAVGNEPFLTSYGGA YQNYVVPAMVNLQQSLVKANLASYVKLVVPCNADAYESNVPSQGTFRPELTQIMTQLVSFLNSNGSPFVVNIYPFLSLYQNSDFPQDFAFFEGSSHPVLD GPNVYYNAFDGNFDTLVSALAKIGYGQMSIVIGEIGWPTDGAVGANLTAARVFNQGLINHLLSNKGTPLRPGSPPMDVYLFGLLDEGAKSTLPGNFERHW GIFSFDGQAKYRLN | |||
| Full Sequence |
|---|
| Protein Sequence Length: 477 Download |
| MGSGVALFTL SFLLAAHHAH SAIGVNWGTL SFHKLRPSTV VDLLKANKIT KVKLFDSNPD 60 ALRALMGTGI QVMISIPNEL LSTFSSDLFV QQNLSRFMGK GGADIRYVAV GNEPFLTSYG 120 GAYQNYVVPA MVNLQQSLVK ANLASYVKLV VPCNADAYES NVPSQGTFRP ELTQIMTQLV 180 SFLNSNGSPF VVNIYPFLSL YQNSDFPQDF AFFEGSSHPV LDGPNVYYNA FDGNFDTLVS 240 ALAKIGYGQM SIVIGEIGWP TDGAVGANLT AARVFNQGLI NHLLSNKGTP LRPGSPPMDV 300 YLFGLLDEGA KSTLPGNFER HWGIFSFDGQ AKYRLNLGLG NRGLKNAENV QYLPSRWCVA 360 HPEKDMTQVT DHLRLACSQA DCTTLNDGGS CSQLGEKDNI SYAFNSYYQL QMQNEKSCDF 420 DGLGMVTFLD PSVGDCRFLV GVTDKSSSAS ELMARWDIYH ICIGLVVWAL TRCYIL* 480 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam07983 | X8 | 9.0e-18 | 356 | 425 | 77 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. | ||
| smart00768 | X8 | 3.0e-30 | 357 | 438 | 84 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. | ||
| pfam00332 | Glyco_hydro_17 | 2.0e-71 | 23 | 333 | 318 | + Glycosyl hydrolases family 17. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ABD65105.1 | 0 | 1 | 476 | 1 | 475 | glycosyl hydrolase family protein [Brassica oleracea] |
| EMBL | CAB10499.1 | 0 | 2 | 471 | 31 | 501 | glucanase like protein [Arabidopsis thaliana] |
| RefSeq | NP_193451.2 | 0 | 2 | 471 | 4 | 474 | glycosyl hydrolase family 17 protein [Arabidopsis thaliana] |
| RefSeq | XP_002329964.1 | 0 | 20 | 468 | 26 | 480 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002525026.1 | 0 | 19 | 462 | 22 | 468 | Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1ghr_A | 5.04467e-44 | 23 | 337 | 1 | 306 | A Chain A, Crystal Structure Of The Nasturtium Seedling Mutant Xyloglucanase Isoform Nxg1-Delta-Yniig |
| PDB | 1aq0_B | 5.04467e-44 | 23 | 337 | 1 | 306 | A Chain A, Barley 1,3-1,4-Beta-Glucanase In Monoclinic Space Group |
| PDB | 1aq0_A | 5.04467e-44 | 23 | 337 | 1 | 306 | A Chain A, Barley 1,3-1,4-Beta-Glucanase In Monoclinic Space Group |
| PDB | 3f55_D | 6.02558e-44 | 23 | 337 | 2 | 315 | A Chain A, Barley 1,3-1,4-Beta-Glucanase In Monoclinic Space Group |
| PDB | 3f55_C | 6.02558e-44 | 23 | 337 | 2 | 315 | A Chain A, Barley 1,3-1,4-Beta-Glucanase In Monoclinic Space Group |
