| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra031901 |
| Family | CBM43 |
| Protein Properties | Length: 486 Molecular Weight: 54445.7 Isoelectric Point: 7.2868 |
| Chromosome | Chromosome/Scaffold: 02 Start: 27210913 End: 27213223 |
| Description | O-Glycosyl hydrolases family 17 protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| CBM43 | 369 | 449 | 9.1e-23 |
| WCIVNKDTINLDKVAPDLEYACYHGDCTAMKGDSRCSKLDRIQNISYAFNMYYQIQGQDVRACDFKGTARITKDNATVGSC | |||
| GH17 | 29 | 347 | 0 |
| GVNWGNIASHPLNPDIVVRMLKDNKINKVKLFDAHSWTMNTLAGTGMEVMVGIPNNLLESLAEDYENAKDWVKENVTAYMRKGGVNIKYVAVGNEPFLSA YNGSFLETTFPALKNIHKALKEAGHTDKMKATIPQNAEVYQSANDKPSEGDFRSDVKKTMLDIVNFFHDNDLPFTVNIYPFLSLYLNEHFPVEFAFFDGK GESIPDKGKNYDNVFDANYDTLVYSLKKAGIKDMKIIIGEIGWPTDGHKHATPKLAEKFYAGLMKRLAEEEGTPLRPERLEVYLFGFLDEDMKSIMPGPF ERHWGIFRYDGTPKFMLDF | |||
| Full Sequence |
|---|
| Protein Sequence Length: 486 Download |
| MAGRAMMLVN VGTVIMTTLT LASLVRGFGV NWGNIASHPL NPDIVVRMLK DNKINKVKLF 60 DAHSWTMNTL AGTGMEVMVG IPNNLLESLA EDYENAKDWV KENVTAYMRK GGVNIKYVAV 120 GNEPFLSAYN GSFLETTFPA LKNIHKALKE AGHTDKMKAT IPQNAEVYQS ANDKPSEGDF 180 RSDVKKTMLD IVNFFHDNDL PFTVNIYPFL SLYLNEHFPV EFAFFDGKGE SIPDKGKNYD 240 NVFDANYDTL VYSLKKAGIK DMKIIIGEIG WPTDGHKHAT PKLAEKFYAG LMKRLAEEEG 300 TPLRPERLEV YLFGFLDEDM KSIMPGPFER HWGIFRYDGT PKFMLDFTGK GRKIVPVAAK 360 GVKYLDKQWC IVNKDTINLD KVAPDLEYAC YHGDCTAMKG DSRCSKLDRI QNISYAFNMY 420 YQIQGQDVRA CDFKGTARIT KDNATVGSCL FPIQIVSGSD DFRISFVFGR FFVVGLVLLG 480 LIATI* 540 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG5309 | COG5309 | 0.002 | 264 | 338 | 79 | + Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism] | ||
| pfam07983 | X8 | 3.0e-17 | 368 | 437 | 80 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. | ||
| smart00768 | X8 | 2.0e-28 | 368 | 451 | 86 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. | ||
| pfam00332 | Glyco_hydro_17 | 6.0e-65 | 29 | 347 | 321 | + Glycosyl hydrolases family 17. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CAN62816.1 | 0 | 28 | 460 | 27 | 459 | hypothetical protein [Vitis vinifera] |
| RefSeq | NP_201284.1 | 0 | 1 | 465 | 1 | 465 | glycosyl hydrolase family 17 protein [Arabidopsis thaliana] |
| RefSeq | XP_002275701.1 | 0 | 28 | 460 | 27 | 459 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002310612.1 | 0 | 4 | 478 | 3 | 479 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002530257.1 | 0 | 5 | 460 | 6 | 460 | Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3ur8_B | 0 | 29 | 348 | 4 | 315 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
| PDB | 3ur8_A | 0 | 29 | 348 | 4 | 315 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
| PDB | 3ur7_B | 0 | 29 | 348 | 4 | 315 | A Chain A, Higher-density Crystal Structure Of Potato Endo-1,3-beta-glucanase |
| PDB | 3ur7_A | 0 | 29 | 348 | 4 | 315 | A Chain A, Higher-density Crystal Structure Of Potato Endo-1,3-beta-glucanase |
| PDB | 4gzj_A | 0 | 29 | 348 | 4 | 315 | A Chain A, Higher-density Crystal Structure Of Potato Endo-1,3-beta-glucanase |
