| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra031954 |
| Family | CBM43 |
| Protein Properties | Length: 493 Molecular Weight: 54192.1 Isoelectric Point: 4.8357 |
| Chromosome | Chromosome/Scaffold: 02 Start: 26929637 End: 26932048 |
| Description | O-Glycosyl hydrolases family 17 protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| CBM43 | 374 | 455 | 1.6e-25 |
| WCMFNPNGRGNISKLGDNINYACSLSDCTALGYGSSCGNLDANGNASYAFNMYFQVQNQEAQACDFEGLATITTQNISQGQC | |||
| GH17 | 33 | 351 | 0 |
| LGVNWGTMASHQLPPKTVVRMLTDNNIKKVKLFDADTDTMGALAGSGVEVMVAIPNDLLQTMGTYQRAKDWVQRNVSRFNFNDGVKIKYVAVGNEPFLTS YNGSFINLTYPALVNIQTALNEAGIGDYIKATVPLNADVYNSPPDNQVPSAGRFRSDILQEMTDIVNFLAQNKAPFTVNIYPFLSLYLSSDFPFEYAFFD GQNTVNDNGVIYTNVFDASFDTLLASLNALNHGDMEVIVGEVGWPTDGDKNANVANAERFYSGLLPRLANNIGTPMRKGYIEVYLFGFIDEDAKSVAPGN FERHWGIFKFDGQPKFPVD | |||
| Full Sequence |
|---|
| Protein Sequence Length: 493 Download |
| MYYRQKRSPM NSSAFFFIVI STVCFSSGGV SALGVNWGTM ASHQLPPKTV VRMLTDNNIK 60 KVKLFDADTD TMGALAGSGV EVMVAIPNDL LQTMGTYQRA KDWVQRNVSR FNFNDGVKIK 120 YVAVGNEPFL TSYNGSFINL TYPALVNIQT ALNEAGIGDY IKATVPLNAD VYNSPPDNQV 180 PSAGRFRSDI LQEMTDIVNF LAQNKAPFTV NIYPFLSLYL SSDFPFEYAF FDGQNTVNDN 240 GVIYTNVFDA SFDTLLASLN ALNHGDMEVI VGEVGWPTDG DKNANVANAE RFYSGLLPRL 300 ANNIGTPMRK GYIEVYLFGF IDEDAKSVAP GNFERHWGIF KFDGQPKFPV DLQGQGQKKF 360 LTGAQNVQYL LNQWCMFNPN GRGNISKLGD NINYACSLSD CTALGYGSSC GNLDANGNAS 420 YAFNMYFQVQ NQEAQACDFE GLATITTQNI SQGQCVFPIQ IGKPSSGHYD YSYSSIVRFG 480 LVISGLMFLL IT* 540 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG5309 | COG5309 | 5.0e-7 | 228 | 343 | 120 | + Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism] | ||
| pfam07983 | X8 | 2.0e-18 | 373 | 444 | 79 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. | ||
| smart00768 | X8 | 3.0e-30 | 373 | 457 | 87 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. | ||
| pfam00332 | Glyco_hydro_17 | 1.0e-73 | 33 | 351 | 323 | + Glycosyl hydrolases family 17. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAS99718.1 | 0 | 34 | 488 | 26 | 481 | At1g64760 [Arabidopsis thaliana] |
| RefSeq | NP_176656.1 | 0 | 34 | 488 | 26 | 481 | glycosyl hydrolase family 17 protein [Arabidopsis thaliana] |
| RefSeq | NP_187051.3 | 0 | 1 | 491 | 1 | 491 | glycosyl hydrolase family 17 protein [Arabidopsis thaliana] |
| RefSeq | NP_197323.1 | 0 | 1 | 488 | 1 | 485 | glycosyl hydrolase family 17 protein [Arabidopsis thaliana] |
| RefSeq | XP_002277003.1 | 0 | 15 | 461 | 7 | 453 | PREDICTED: hypothetical protein [Vitis vinifera] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3ur8_B | 0 | 33 | 352 | 3 | 314 | A Chain A, Crystal Structure Of A Beta-Galactosidase From Bacteroides Thetaiotaomicron |
| PDB | 3ur8_A | 0 | 33 | 352 | 3 | 314 | A Chain A, Crystal Structure Of A Beta-Galactosidase From Bacteroides Thetaiotaomicron |
| PDB | 3ur7_B | 0 | 33 | 352 | 3 | 314 | A Chain A, Higher-density Crystal Structure Of Potato Endo-1,3-beta-glucanase |
| PDB | 3ur7_A | 0 | 33 | 352 | 3 | 314 | A Chain A, Higher-density Crystal Structure Of Potato Endo-1,3-beta-glucanase |
| PDB | 4gzj_A | 0 | 33 | 352 | 3 | 314 | A Chain A, Higher-density Crystal Structure Of Potato Endo-1,3-beta-glucanase |
