Basic Information | |
---|---|
Species | Citrus clementina |
Cazyme ID | Ciclev10008695m |
Family | CBM43 |
Protein Properties | Length: 371 Molecular Weight: 40591.9 Isoelectric Point: 6.3523 |
Chromosome | Chromosome/Scaffold: 1 Start: 26167983 End: 26169507 |
Description | O-Glycosyl hydrolases family 17 protein |
View CDS |
External Links |
---|
CAZyDB |
Signature Domain Download full data set without filtering | |||
---|---|---|---|
Family | Start | End | Evalue |
CBM43 | 255 | 336 | 1.2e-25 |
WCVMKPSARLDDPQVAPSVSYACGLADCTSLGYGTSCGNLDARGNISYAFNSYYQKNNQLDTACKFPNLSMITKADPSVGSC | |||
GH17 | 3 | 233 | 0 |
RYVAVGNEPFLETYNGSFLRTTFPALRNVQAALIKAGLSNQVKVTVPLNADVYESASGVPSGGDFRADIHDLMLAIVKFLSDNGGPFTVNIYPFISLYSD SNFPVEYAFFDGNSSPINDGGATYYNMFDANHDTLVRALQKNGYGNLPIIIGEIGWPTDGDRNANNEYARRFNQGFMSHISGGKGTPMRPGPIDAYLFSL IDEDAKSVDPGNFERHWGIFTYDGRPKYQIN |
Full Sequence |
---|
Protein Sequence Length: 371 Download |
MCRYVAVGNE PFLETYNGSF LRTTFPALRN VQAALIKAGL SNQVKVTVPL NADVYESASG 60 VPSGGDFRAD IHDLMLAIVK FLSDNGGPFT VNIYPFISLY SDSNFPVEYA FFDGNSSPIN 120 DGGATYYNMF DANHDTLVRA LQKNGYGNLP IIIGEIGWPT DGDRNANNEY ARRFNQGFMS 180 HISGGKGTPM RPGPIDAYLF SLIDEDAKSV DPGNFERHWG IFTYDGRPKY QINLGTTNSG 240 SLVPARSVHY LQKKWCVMKP SARLDDPQVA PSVSYACGLA DCTSLGYGTS CGNLDARGNI 300 SYAFNSYYQK NNQLDTACKF PNLSMITKAD PSVGSCIFQI TMEPYYGGAE RRIGSLRLVV 360 GLFLFVLIIL * |
Functional Domains Download unfiltered results here | ||||||||
---|---|---|---|---|---|---|---|---|
Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG5309 | COG5309 | 3.0e-6 | 147 | 225 | 79 | + Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism] | ||
pfam07983 | X8 | 6.0e-15 | 254 | 320 | 74 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. | ||
smart00768 | X8 | 2.0e-29 | 254 | 338 | 87 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. | ||
pfam00332 | Glyco_hydro_17 | 5.0e-56 | 3 | 233 | 234 | + Glycosyl hydrolases family 17. |
Gene Ontology | |
---|---|
GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CBI38945.1 | 0 | 3 | 370 | 112 | 483 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002273826.1 | 0 | 3 | 370 | 194 | 565 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002309034.1 | 0 | 3 | 354 | 92 | 444 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002331390.1 | 0 | 3 | 348 | 102 | 448 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002530371.1 | 0 | 3 | 370 | 111 | 482 | Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3ur8_B | 1e-36 | 3 | 234 | 88 | 314 | A Chain A, Crystal Structure Of The Chimeric Muscarinic Toxin Mt7 With Loop 1 From Mt1. |
PDB | 3ur8_A | 1e-36 | 3 | 234 | 88 | 314 | A Chain A, Crystal Structure Of The Chimeric Muscarinic Toxin Mt7 With Loop 1 From Mt1. |
PDB | 3ur7_B | 1e-36 | 3 | 234 | 88 | 314 | A Chain A, Higher-density Crystal Structure Of Potato Endo-1,3-beta-glucanase |
PDB | 3ur7_A | 1e-36 | 3 | 234 | 88 | 314 | A Chain A, Higher-density Crystal Structure Of Potato Endo-1,3-beta-glucanase |
PDB | 1ghr_A | 2e-36 | 3 | 234 | 86 | 306 | A Chain A, Higher-density Crystal Structure Of Potato Endo-1,3-beta-glucanase |
EST Download unfiltered results here | ||||
---|---|---|---|---|
Hit | Length | Start | End | EValue |
EY783741 | 278 | 10 | 287 | 0 |
HO797198 | 341 | 3 | 343 | 0 |
FC924520 | 249 | 52 | 300 | 0 |
DY825554 | 294 | 43 | 336 | 0 |
DT739144 | 287 | 66 | 352 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
---|