| Basic Information | |
|---|---|
| Species | Glycine max |
| Cazyme ID | Glyma18g06570.1 |
| Family | CBM43 |
| Protein Properties | Length: 485 Molecular Weight: 53274.8 Isoelectric Point: 7.2709 |
| Chromosome | Chromosome/Scaffold: 18 Start: 5117232 End: 5120617 |
| Description | O-Glycosyl hydrolases family 17 protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| CBM43 | 370 | 449 | 4.7e-25 |
| WCVVNNNKDLSNATASALEACASADCTALSPGGSCFNISWPSNISYAFNSYYQQHDQRAESCDFGGLGLITTVDPSMDHC | |||
| GH17 | 27 | 349 | 0 |
| VGVNWGTMASHPLPPHKVVKLLKSNSITKVKLFDANSDVLQALSGSNIDVSVGVPNTMLRSLNSSKKAADSWVHDNVTRYMPNVGSVTRIEYVAVGDEPF LKIYNEQFHPFLIGAAMNIQAALKKAKLDSKVKVVVPCSFDSFESGFNLSSGVHLRPDINKTMIELLTFLDKHGSPFFVTISPFVTHLQTKNISLDFSLF KETARPHNFSHKTYKNSFDLSYDTVVTVLSTAGYPNMDIVVAKIGWPTDGAVNGSSYLAETFIKGLINHLHSNLGTPLRPHKPPLETYIMSLLDEDQRSI ASGNFERHWGLFTFDGQAKYHMD | |||
| Full Sequence |
|---|
| Protein Sequence Length: 485 Download |
| MPTTTFSCFL FTFLIITSSI ACVAGAVGVN WGTMASHPLP PHKVVKLLKS NSITKVKLFD 60 ANSDVLQALS GSNIDVSVGV PNTMLRSLNS SKKAADSWVH DNVTRYMPNV GSVTRIEYVA 120 VGDEPFLKIY NEQFHPFLIG AAMNIQAALK KAKLDSKVKV VVPCSFDSFE SGFNLSSGVH 180 LRPDINKTMI ELLTFLDKHG SPFFVTISPF VTHLQTKNIS LDFSLFKETA RPHNFSHKTY 240 KNSFDLSYDT VVTVLSTAGY PNMDIVVAKI GWPTDGAVNG SSYLAETFIK GLINHLHSNL 300 GTPLRPHKPP LETYIMSLLD EDQRSIASGN FERHWGLFTF DGQAKYHMDL GQGSKSLVNA 360 QNVEYLSSKW CVVNNNKDLS NATASALEAC ASADCTALSP GGSCFNISWP SNISYAFNSY 420 YQQHDQRAES CDFGGLGLIT TVDPSMDHCR FPIEIRVSHS EFHRMCNFLQ VILLVTTLLV 480 SLAL* 540 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG5309 | COG5309 | 0.0001 | 262 | 341 | 84 | + Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism] | ||
| pfam07983 | X8 | 2.0e-12 | 369 | 437 | 79 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. | ||
| smart00768 | X8 | 1.0e-26 | 369 | 451 | 85 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. | ||
| pfam00332 | Glyco_hydro_17 | 1.0e-67 | 27 | 349 | 324 | + Glycosyl hydrolases family 17. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ABF95444.1 | 0 | 27 | 474 | 35 | 480 | Glycosyl hydrolases family 17 protein, expressed [Oryza sativa (japonica cultivar-group)] |
| EMBL | CBI28434.1 | 0 | 24 | 483 | 20 | 482 | unnamed protein product [Vitis vinifera] |
| RefSeq | NP_200656.2 | 0 | 26 | 470 | 25 | 462 | glycosyl hydrolase family 17 protein [Arabidopsis thaliana] |
| RefSeq | XP_002269108.1 | 0 | 18 | 479 | 14 | 481 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002313970.1 | 0 | 26 | 476 | 21 | 471 | predicted protein [Populus trichocarpa] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3f55_D | 1.99965e-42 | 27 | 350 | 2 | 315 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
| PDB | 3f55_C | 1.99965e-42 | 27 | 350 | 2 | 315 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
| PDB | 3f55_B | 1.99965e-42 | 27 | 350 | 2 | 315 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
| PDB | 3f55_A | 1.99965e-42 | 27 | 350 | 2 | 315 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
| PDB | 3em5_D | 1.99965e-42 | 27 | 350 | 2 | 315 | A Chain A, Crystal Structure Of A Native Endo Beta-1,3-Glucanase (Hev B 2), A Major Allergen From Hevea Brasiliensis |
