Basic Information | |
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Species | Gossypium raimondii |
Cazyme ID | Gorai.008G101400.1 |
Family | CBM43 |
Protein Properties | Length: 478 Molecular Weight: 52620.9 Isoelectric Point: 6.6269 |
Chromosome | Chromosome/Scaffold: 08 Start: 30180209 End: 30181811 |
Description | O-Glycosyl hydrolases family 17 protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CBM43 | 363 | 443 | 5.2e-25 |
WCVLESYASNQDLIGQQTGWACARSDCTALQDGASCSNLDPDRTVSYAFNSYYQMNNQDEDACDFEGLATVVSKDPSTMSC | |||
GH17 | 23 | 340 | 0 |
IGVNWGTMTSHPLHPRIVVQLLKDNGFEKVKLFDSDPWMVGYLAGTGIEVMLGIPNDQLEFLSQDYGNAKDWVKENCTSHLRKGGVNIKYVAVGNEPFLT SYKGRFLKTTFPALKNIQKALNEAGLGNKIKAVVPQNADVYESKSDKPSDGVFRRDVKAVMAQIVRFLKENGAPFVVNIYPFISLTMNSKFPSDFAFFDG GHPIQDDNVQYNNVFEANFDTLIYALKDLGTPNLTILVGEVGWPTDGHKKANKNSAKKFYDGLFKVLASKKGTPLRPGEMDVYLFGLFDEDTKSIEPGNF ERHWGIFDFDGKPKFTMD |
Full Sequence |
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Protein Sequence Length: 478 Download |
MAVLWAGALI LVATSVKVVA DNIGVNWGTM TSHPLHPRIV VQLLKDNGFE KVKLFDSDPW 60 MVGYLAGTGI EVMLGIPNDQ LEFLSQDYGN AKDWVKENCT SHLRKGGVNI KYVAVGNEPF 120 LTSYKGRFLK TTFPALKNIQ KALNEAGLGN KIKAVVPQNA DVYESKSDKP SDGVFRRDVK 180 AVMAQIVRFL KENGAPFVVN IYPFISLTMN SKFPSDFAFF DGGHPIQDDN VQYNNVFEAN 240 FDTLIYALKD LGTPNLTILV GEVGWPTDGH KKANKNSAKK FYDGLFKVLA SKKGTPLRPG 300 EMDVYLFGLF DEDTKSIEPG NFERHWGIFD FDGKPKFTMD ISGKGGDKHL VAAKGVKYLP 360 KQWCVLESYA SNQDLIGQQT GWACARSDCT ALQDGASCSN LDPDRTVSYA FNSYYQMNNQ 420 DEDACDFEGL ATVVSKDPST MSCRFNTQIK VDGATRLSFA QGAVPAISSS LTLFFLL* 480 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG5309 | COG5309 | 0.0001 | 255 | 332 | 82 | + Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism] | ||
pfam07983 | X8 | 2.0e-14 | 362 | 432 | 81 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. | ||
smart00768 | X8 | 3.0e-27 | 362 | 445 | 86 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. | ||
pfam00332 | Glyco_hydro_17 | 9.0e-70 | 23 | 340 | 320 | + Glycosyl hydrolases family 17. |
Gene Ontology | |
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GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CAN62816.1 | 0 | 6 | 453 | 4 | 458 | hypothetical protein [Vitis vinifera] |
GenBank | EAZ37505.1 | 0 | 20 | 448 | 30 | 456 | hypothetical protein OsJ_21839 [Oryza sativa Japonica Group] |
RefSeq | NP_001057968.1 | 0 | 20 | 448 | 30 | 456 | Os06g0590600 [Oryza sativa (japonica cultivar-group)] |
RefSeq | XP_002310612.1 | 0 | 3 | 477 | 7 | 484 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002530257.1 | 0 | 3 | 453 | 8 | 459 | Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3ur8_B | 0 | 23 | 342 | 3 | 315 | A Chain A, Structure Of The Complex Of A Mitotic Kinesin With Its Calcium Binding Regulator |
PDB | 3ur8_A | 0 | 23 | 342 | 3 | 315 | A Chain A, Structure Of The Complex Of A Mitotic Kinesin With Its Calcium Binding Regulator |
PDB | 3ur7_B | 0 | 23 | 342 | 3 | 315 | A Chain A, Higher-density Crystal Structure Of Potato Endo-1,3-beta-glucanase |
PDB | 3ur7_A | 0 | 23 | 342 | 3 | 315 | A Chain A, Higher-density Crystal Structure Of Potato Endo-1,3-beta-glucanase |
PDB | 4gzj_A | 0 | 23 | 342 | 3 | 315 | A Chain A, Higher-density Crystal Structure Of Potato Endo-1,3-beta-glucanase |