Basic Information | |
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Species | Gossypium raimondii |
Cazyme ID | Gorai.010G094500.1 |
Family | CBM43 |
Protein Properties | Length: 492 Molecular Weight: 53425.2 Isoelectric Point: 8.128 |
Chromosome | Chromosome/Scaffold: 10 Start: 15599211 End: 15601077 |
Description | O-Glycosyl hydrolases family 17 protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CBM43 | 365 | 447 | 4.6e-24 |
WCVMSPSASSSDPNTLAQSVTYACENADCTSLGYGSSCGNLDAQSNASYAFNSYFQTMNQSKEACSFNNLATITNVDPSKPPC | |||
GH17 | 28 | 345 | 0 |
ACNWGLQSTHPLPPNIVVRLLKDNGFNKVKLFEADTGALKALGRSGIQVMVGIPNDMLASLASAVGNAEAWVKQNVSYYISTHGTDIRSVAIGNEPFLHS YKDMFVRTTLPALENIQAALIKAGLGKQVKVTIPLNADVYQTDSGLPSGGNFRPELLDLMTKIIKFLQENGGFITINIYPFLSLQADPSFPKEYAFFNNT ASPLVDGSIVYTNVYDANFDTLISALEKNGFGRMPIVVGEVGWPTDGDPNGNIDNAKRFNQALISRIIQGQGSPKRRTPPDVYIFSLLDEDHKSTLPGNF ERHWGIFKYDGSVKYPLD |
Full Sequence |
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Protein Sequence Length: 492 Download |
MGQIRLVWFL FLCLLGHEGL AKGVLGLACN WGLQSTHPLP PNIVVRLLKD NGFNKVKLFE 60 ADTGALKALG RSGIQVMVGI PNDMLASLAS AVGNAEAWVK QNVSYYISTH GTDIRSVAIG 120 NEPFLHSYKD MFVRTTLPAL ENIQAALIKA GLGKQVKVTI PLNADVYQTD SGLPSGGNFR 180 PELLDLMTKI IKFLQENGGF ITINIYPFLS LQADPSFPKE YAFFNNTASP LVDGSIVYTN 240 VYDANFDTLI SALEKNGFGR MPIVVGEVGW PTDGDPNGNI DNAKRFNQAL ISRIIQGQGS 300 PKRRTPPDVY IFSLLDEDHK STLPGNFERH WGIFKYDGSV KYPLDMGNGR ALVPAKGVKY 360 LAKQWCVMSP SASSSDPNTL AQSVTYACEN ADCTSLGYGS SCGNLDAQSN ASYAFNSYFQ 420 TMNQSKEACS FNNLATITNV DPSKPPCRFE IMIDTRKQKA ARTPFKSSAS KMEGIFAALV 480 VVLGLVICGV H* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG5309 | COG5309 | 8.0e-9 | 259 | 337 | 83 | + Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism] | ||
pfam07983 | X8 | 2.0e-17 | 364 | 436 | 80 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. | ||
smart00768 | X8 | 9.0e-29 | 364 | 449 | 88 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. | ||
pfam00332 | Glyco_hydro_17 | 6.0e-67 | 27 | 345 | 321 | + Glycosyl hydrolases family 17. |
Gene Ontology | |
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GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CBI27737.1 | 0 | 25 | 489 | 23 | 484 | unnamed protein product [Vitis vinifera] |
RefSeq | NP_197587.1 | 0 | 5 | 490 | 9 | 498 | glycosyl hydrolase family 17 protein [Arabidopsis thaliana] |
RefSeq | XP_002277217.1 | 0 | 28 | 489 | 18 | 476 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002309443.1 | 0 | 26 | 451 | 1 | 425 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002516181.1 | 0 | 1 | 489 | 16 | 500 | Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1ghr_A | 0 | 31 | 345 | 5 | 305 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1aq0_B | 0 | 31 | 345 | 5 | 305 | A Chain A, Barley 1,3-1,4-Beta-Glucanase In Monoclinic Space Group |
PDB | 1aq0_A | 0 | 31 | 345 | 5 | 305 | A Chain A, Barley 1,3-1,4-Beta-Glucanase In Monoclinic Space Group |
PDB | 3f55_D | 1.99993e-41 | 31 | 346 | 6 | 315 | A Chain A, Barley 1,3-1,4-Beta-Glucanase In Monoclinic Space Group |
PDB | 3f55_C | 1.99993e-41 | 31 | 346 | 6 | 315 | A Chain A, Barley 1,3-1,4-Beta-Glucanase In Monoclinic Space Group |