Basic Information | |
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Species | Gossypium raimondii |
Cazyme ID | Gorai.011G114500.1 |
Family | CBM43 |
Protein Properties | Length: 517 Molecular Weight: 56864.1 Isoelectric Point: 8.416 |
Chromosome | Chromosome/Scaffold: 11 Start: 14745649 End: 14747992 |
Description | O-Glycosyl hydrolases family 17 protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CBM43 | 368 | 448 | 2.9e-23 |
WCVYNKAASNQKDLAVKVAWACNNTDCTTLVPGASCSGMGIDMNASVAFNMYYQMANQTKAACDFEGLAKIVKRDPSNGTC | |||
GH17 | 25 | 345 | 0 |
LGVNWGVIASHPLDPKIVVNILKDNGIKKVKLFHAEHDILTALSGTDIEVMVGIPNHSLESLSEKYSVAQAWVKANVTAYMGKKGVNFKYVAVGNEPFLA AYNGTYNNLTLPAMKNILKALNEAGVGKDIKVSTPLNGDVYITPTYKPSDGIFRHDLADIMNGICEFLHKNNAAFIVNIYPFLNLYQNPGFPEPYAFFDN DDSNSMDDNGVKYRSVLDANIDTLVAALKVSNFSDIPIIVGEVGWPTDGNIYATTKNAKKFYNGLLKRMTKNEGTPLRPKQYPDVYMFSLLDEDLKSIDP GMFERHWGIFSFDGQPKFPLD |
Full Sequence |
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Protein Sequence Length: 517 Download |
MLQAQVFLWA YILLFFPASI VAQGLGVNWG VIASHPLDPK IVVNILKDNG IKKVKLFHAE 60 HDILTALSGT DIEVMVGIPN HSLESLSEKY SVAQAWVKAN VTAYMGKKGV NFKYVAVGNE 120 PFLAAYNGTY NNLTLPAMKN ILKALNEAGV GKDIKVSTPL NGDVYITPTY KPSDGIFRHD 180 LADIMNGICE FLHKNNAAFI VNIYPFLNLY QNPGFPEPYA FFDNDDSNSM DDNGVKYRSV 240 LDANIDTLVA ALKVSNFSDI PIIVGEVGWP TDGNIYATTK NAKKFYNGLL KRMTKNEGTP 300 LRPKQYPDVY MFSLLDEDLK SIDPGMFERH WGIFSFDGQP KFPLDLSGKG QNKRLVGGKN 360 VTYMEKQWCV YNKAASNQKD LAVKVAWACN NTDCTTLVPG ASCSGMGIDM NASVAFNMYY 420 QMANQTKAAC DFEGLAKIVK RDPSNGTCRF PIMIKTIQTT SNSSASAPKS SRSSTFSSST 480 SHSPLQTHSP SPSSSPFHSP LLIFQIFVGI FTIWFV* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG5309 | COG5309 | 1.0e-6 | 258 | 337 | 84 | + Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism] | ||
pfam07983 | X8 | 8.0e-13 | 367 | 436 | 77 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. | ||
smart00768 | X8 | 8.0e-26 | 367 | 450 | 86 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. | ||
pfam00332 | Glyco_hydro_17 | 4.0e-77 | 25 | 345 | 322 | + Glycosyl hydrolases family 17. |
Gene Ontology | |
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GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | NP_001051526.1 | 0 | 22 | 454 | 31 | 463 | Os03g0792800 [Oryza sativa (japonica cultivar-group)] |
RefSeq | XP_002277003.1 | 0 | 7 | 455 | 8 | 454 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002310612.1 | 0 | 1 | 454 | 1 | 458 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002463758.1 | 0 | 22 | 456 | 28 | 466 | hypothetical protein SORBIDRAFT_01g005610 [Sorghum bicolor] |
RefSeq | XP_002525445.1 | 0 | 24 | 456 | 22 | 455 | Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3ur8_B | 0 | 23 | 347 | 1 | 315 | A Chain A, Raphanus Sativus Anionic Peroxidase. |
PDB | 3ur8_A | 0 | 23 | 347 | 1 | 315 | A Chain A, Raphanus Sativus Anionic Peroxidase. |
PDB | 3ur7_B | 0 | 23 | 347 | 1 | 315 | A Chain A, Higher-density Crystal Structure Of Potato Endo-1,3-beta-glucanase |
PDB | 3ur7_A | 0 | 23 | 347 | 1 | 315 | A Chain A, Higher-density Crystal Structure Of Potato Endo-1,3-beta-glucanase |
PDB | 4gzj_A | 0 | 23 | 347 | 1 | 315 | A Chain A, Higher-density Crystal Structure Of Potato Endo-1,3-beta-glucanase |