Basic Information | |
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Species | Gossypium raimondii |
Cazyme ID | Gorai.011G114600.1 |
Family | CBM43 |
Protein Properties | Length: 471 Molecular Weight: 51846.4 Isoelectric Point: 7.4879 |
Chromosome | Chromosome/Scaffold: 11 Start: 14769669 End: 14771762 |
Description | O-Glycosyl hydrolases family 17 protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CBM43 | 368 | 448 | 1.2e-23 |
WCVYNKDASNQKDLAVKVAWACNSTDCTTLVPGASCSGMGIDMNASVAFNMYYQMANQTKGACDFEGLAKIVKQDPSNGTC | |||
GH17 | 25 | 345 | 0 |
LGVNWGVIASHPLDPKIVVNILKDNGIKKVKLFHAEHDILTALSGTDIEVMVGIPNHSLESLSEKYSVAQAWVKANITAYMGKKGVNFKYVAVGNEPFLA AYNGTYNNLTLPAMKNILKALNEAGVGKDIKVSTPLNGDVYITPTYKPSDGTFRHDLADIMNGICEFLHKNDAAFIVNIYPFLNLYQNPGFPEPYAFFDN DDSNSMDDHGVKYRSVLDANIDTLVAALKVANFSDIPIIVGEVGWPTDGNIYATTKNAKKFYNGLLKRMATNEGTPLRPKQYPDVYMFSLLDEDLKSIDP GMFERHWGIFSFDGQPKFPMD |
Full Sequence |
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Protein Sequence Length: 471 Download |
MLRAQVFLWA YILIFFPASV VAQGLGVNWG VIASHPLDPK IVVNILKDNG IKKVKLFHAE 60 HDILTALSGT DIEVMVGIPN HSLESLSEKY SVAQAWVKAN ITAYMGKKGV NFKYVAVGNE 120 PFLAAYNGTY NNLTLPAMKN ILKALNEAGV GKDIKVSTPL NGDVYITPTY KPSDGTFRHD 180 LADIMNGICE FLHKNDAAFI VNIYPFLNLY QNPGFPEPYA FFDNDDSNSM DDHGVKYRSV 240 LDANIDTLVA ALKVANFSDI PIIVGEVGWP TDGNIYATTK NAKKFYNGLL KRMATNEGTP 300 LRPKQYPDVY MFSLLDEDLK SIDPGMFERH WGIFSFDGQP KFPMDLSGKG QNKSLVGGKN 360 VKYMEKQWCV YNKDASNQKD LAVKVAWACN STDCTTLVPG ASCSGMGIDM NASVAFNMYY 420 QMANQTKGAC DFEGLAKIVK QDPSNGTCRF PIMIKTIQTT SNSNASAPKS S 480 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG5309 | COG5309 | 3.0e-6 | 258 | 337 | 84 | + Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism] | ||
pfam07983 | X8 | 3.0e-13 | 367 | 436 | 77 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. | ||
smart00768 | X8 | 8.0e-27 | 367 | 450 | 86 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. | ||
pfam00332 | Glyco_hydro_17 | 7.0e-75 | 25 | 345 | 322 | + Glycosyl hydrolases family 17. |
Gene Ontology | |
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GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | NP_001051526.1 | 0 | 22 | 454 | 31 | 463 | Os03g0792800 [Oryza sativa (japonica cultivar-group)] |
RefSeq | XP_002277003.1 | 0 | 3 | 455 | 4 | 454 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002310612.1 | 0 | 1 | 454 | 1 | 458 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002463758.1 | 0 | 1 | 456 | 7 | 466 | hypothetical protein SORBIDRAFT_01g005610 [Sorghum bicolor] |
RefSeq | XP_002525445.1 | 0 | 24 | 456 | 22 | 455 | Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3ur8_B | 0 | 23 | 347 | 1 | 315 | A Chain A, Class Iv Chitinase Structure From Picea Abies At 1.8a |
PDB | 3ur8_A | 0 | 23 | 347 | 1 | 315 | A Chain A, Class Iv Chitinase Structure From Picea Abies At 1.8a |
PDB | 3ur7_B | 0 | 23 | 347 | 1 | 315 | A Chain A, Higher-density Crystal Structure Of Potato Endo-1,3-beta-glucanase |
PDB | 3ur7_A | 0 | 23 | 347 | 1 | 315 | A Chain A, Higher-density Crystal Structure Of Potato Endo-1,3-beta-glucanase |
PDB | 4gzj_A | 0 | 23 | 347 | 1 | 315 | A Chain A, Higher-density Crystal Structure Of Potato Endo-1,3-beta-glucanase |