Basic Information | |
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Species | Medicago truncatula |
Cazyme ID | Medtr3g108600.1 |
Family | CBM43 |
Protein Properties | Length: 470 Molecular Weight: 51205.4 Isoelectric Point: 6.7515 |
Chromosome | Chromosome/Scaffold: 3 Start: 38843520 End: 38846047 |
Description | O-Glycosyl hydrolases family 17 protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CBM43 | 351 | 433 | 2.9e-26 |
WCVLKPSANLNSDQLAPSVSYACQNADCTSLGYGTSCSNLDVKGNISYAFNSYYQVNDQMDSACKFPGLSMVTDKDPSVGTCK | |||
GH17 | 30 | 329 | 0 |
IGVNWGTQCTHLLSPTTVVKMLKDNGIQKVKLFDADPNILNALKKTGIQVMVGIPNDMLYTLANSLPAAEKWVSKNVSAHVSSGGVDIRYVAVGNEPFLS TYNGTFEATTLPALVNIQAALTKAGLKKPSDGDFRSNINNLMLQIVKFLSDNGAPFTVNIYPFISLYLDPSFPSEYAFFNGFQSAIVDNGKTYDNVLDAN HDTLVWALQKHGYGNLPIIVGEIGWPTDGDKFANLQNAQRFNQGFMSKYVSGKGTPMRPSPIDAYLFSFIDEDNKSIQPGNFERHWGLFYLDGQPKYQLN |
Full Sequence |
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Protein Sequence Length: 470 Download |
MEFARSEKFS NCVVFILFFN ALLLCCVSGI GVNWGTQCTH LLSPTTVVKM LKDNGIQKVK 60 LFDADPNILN ALKKTGIQVM VGIPNDMLYT LANSLPAAEK WVSKNVSAHV SSGGVDIRYV 120 AVGNEPFLST YNGTFEATTL PALVNIQAAL TKAGLKKPSD GDFRSNINNL MLQIVKFLSD 180 NGAPFTVNIY PFISLYLDPS FPSEYAFFNG FQSAIVDNGK TYDNVLDANH DTLVWALQKH 240 GYGNLPIIVG EIGWPTDGDK FANLQNAQRF NQGFMSKYVS GKGTPMRPSP IDAYLFSFID 300 EDNKSIQPGN FERHWGLFYL DGQPKYQLNL GTGRANGLVG ASGVDHLAKK WCVLKPSANL 360 NSDQLAPSVS YACQNADCTS LGYGTSCSNL DVKGNISYAF NSYYQVNDQM DSACKFPGLS 420 MVTDKDPSVG TCKFRIMIQT DSAELNGIVG STTTVFLALV FSLLCNVKF* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG5309 | COG5309 | 7.0e-5 | 243 | 321 | 79 | + Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism] | ||
pfam07983 | X8 | 8.0e-16 | 350 | 421 | 79 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. | ||
smart00768 | X8 | 6.0e-31 | 350 | 434 | 87 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. | ||
pfam00332 | Glyco_hydro_17 | 1.0e-73 | 30 | 329 | 320 | + Glycosyl hydrolases family 17. |
Gene Ontology | |
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GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | NP_001151032.1 | 0 | 33 | 443 | 36 | 465 | glucan endo-1,3-beta-glucosidase 6 [Zea mays] |
RefSeq | NP_194843.1 | 0 | 14 | 463 | 6 | 478 | glycosyl hydrolase family 17 protein [Arabidopsis thaliana] |
RefSeq | XP_002324127.1 | 0 | 27 | 464 | 38 | 498 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002330836.1 | 0 | 22 | 463 | 30 | 496 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002528007.1 | 0 | 27 | 461 | 26 | 485 | Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1ghr_A | 0 | 30 | 330 | 1 | 306 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1aq0_B | 0 | 30 | 330 | 1 | 306 | A Chain A, Barley 1,3-1,4-Beta-Glucanase In Monoclinic Space Group |
PDB | 1aq0_A | 0 | 30 | 330 | 1 | 306 | A Chain A, Barley 1,3-1,4-Beta-Glucanase In Monoclinic Space Group |
PDB | 3ur8_B | 0 | 30 | 330 | 3 | 314 | A Chain A, Barley 1,3-1,4-Beta-Glucanase In Monoclinic Space Group |
PDB | 3ur8_A | 0 | 30 | 330 | 3 | 314 | A Chain A, Barley 1,3-1,4-Beta-Glucanase In Monoclinic Space Group |