Basic Information | |
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Species | Medicago truncatula |
Cazyme ID | Medtr4g124440.1 |
Family | CBM43 |
Protein Properties | Length: 603 Molecular Weight: 66543.6 Isoelectric Point: 9.608 |
Chromosome | Chromosome/Scaffold: 4 Start: 43393136 End: 43399522 |
Description | O-Glycosyl hydrolases family 17 protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CBM43 | 366 | 449 | 1.3e-22 |
WCVISTQANVMDPNFAQSMSKACTYADCTSLAPGSSCSGLDTKGNASYAFNMYYQRLDQRKDACQFNGLSVVTNIDPSPSQGSC | |||
GH17 | 30 | 346 | 0 |
CNWGTITSHPLPAQIMVKLMRDNGINKVKLFEADPMALKALGNSGIQVMVGIPNDLLDSLATNVNAAIAWVDQNVSAFISKNGVDIRYVAVGNEAFLKTY NGRFVQSTFPAIKNIQAALIKAGLGRQVKVTTPLNADVYQSDTGLPSGGHFRPDIQNQMMSIIKFLSQSNGPLTFNIYPFLSLDADPNFPKEFAFFDGSA APVVDGSITYTNVFDANFDTLISALEKNGFGSMNVIIGEVGWPTDGTSNANIKSAQRFNQGLVDRIVKKQGTPKRPTPPEIYMFALLDEDLKSIDPGPFE RHWGIFNFDGSMKYPLN |
Full Sequence |
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Protein Sequence Length: 603 Download |
MGFQRFSTCF LLALCILSQS LAKGTLGFAC NWGTITSHPL PAQIMVKLMR DNGINKVKLF 60 EADPMALKAL GNSGIQVMVG IPNDLLDSLA TNVNAAIAWV DQNVSAFISK NGVDIRYVAV 120 GNEAFLKTYN GRFVQSTFPA IKNIQAALIK AGLGRQVKVT TPLNADVYQS DTGLPSGGHF 180 RPDIQNQMMS IIKFLSQSNG PLTFNIYPFL SLDADPNFPK EFAFFDGSAA PVVDGSITYT 240 NVFDANFDTL ISALEKNGFG SMNVIIGEVG WPTDGTSNAN IKSAQRFNQG LVDRIVKKQG 300 TPKRPTPPEI YMFALLDEDL KSIDPGPFER HWGIFNFDGS MKYPLNLGGG KSLVGAKGVK 360 YLAKQWCVIS TQANVMDPNF AQSMSKACTY ADCTSLAPGS SCSGLDTKGN ASYAFNMYYQ 420 RLDQRKDACQ FNGLSVVTNI DPSPSQGSCH FEIMIDIGKH ETKSTSFAAP KIGLAYKFMK 480 PGRSDIHRSP RRAMILASQV MNFIARHASP FPSPRECFWY RSPRRTTLPR LKFVYWENGM 540 LHLWPRLLVK IGEEVGWFGN FLKNEAILRK LSFCFCYVQF ASAVSCRQFT KTSAVNCRRA 600 FR* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG5309 | COG5309 | 8.0e-7 | 55 | 338 | 297 | + Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism] | ||
pfam07983 | X8 | 2.0e-12 | 365 | 434 | 77 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. | ||
smart00768 | X8 | 5.0e-24 | 365 | 451 | 89 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. | ||
pfam00332 | Glyco_hydro_17 | 2.0e-78 | 31 | 346 | 318 | + Glycosyl hydrolases family 17. |
Gene Ontology | |
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GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CBI27737.1 | 0 | 26 | 469 | 23 | 464 | unnamed protein product [Vitis vinifera] |
RefSeq | NP_197587.1 | 0 | 10 | 461 | 13 | 469 | glycosyl hydrolase family 17 protein [Arabidopsis thaliana] |
RefSeq | XP_002277217.1 | 0 | 29 | 469 | 18 | 456 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002309443.1 | 0 | 27 | 453 | 1 | 425 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002516181.1 | 0 | 10 | 469 | 24 | 481 | Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1ghr_A | 0 | 35 | 347 | 7 | 306 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 1aq0_B | 0 | 35 | 347 | 7 | 306 | A Chain A, Barley 1,3-1,4-Beta-Glucanase In Monoclinic Space Group |
PDB | 1aq0_A | 0 | 35 | 347 | 7 | 306 | A Chain A, Barley 1,3-1,4-Beta-Glucanase In Monoclinic Space Group |
PDB | 3f55_D | 0 | 41 | 347 | 15 | 315 | A Chain A, Barley 1,3-1,4-Beta-Glucanase In Monoclinic Space Group |
PDB | 3f55_C | 0 | 41 | 347 | 15 | 315 | A Chain A, Barley 1,3-1,4-Beta-Glucanase In Monoclinic Space Group |