Basic Information | |
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Species | Medicago truncatula |
Cazyme ID | Medtr6g032820.1 |
Family | CBM43 |
Protein Properties | Length: 450 Molecular Weight: 49953.9 Isoelectric Point: 4.4545 |
Chromosome | Chromosome/Scaffold: 6 Start: 6818482 End: 6821448 |
Description | O-Glycosyl hydrolases family 17 protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CBM43 | 363 | 443 | 1.6e-25 |
WCMFNPNANNLSNLADNINYACTFADCTPLGYGSSCNNLDANGNASYAFNMYYQVQNQNDLACNFEGLAMLTTNNISTPTC | |||
GH17 | 18 | 339 | 0 |
LGVNWGTQATHPLKPDTVVQMLKDNGIQKVKLFDADEETMSALGGSGIEVMVAIPNNQLAEMSDYDRALQWVRKNVTRYNFKSGGVNIKYVAVGNEPFLK AYNNSFLNVTFPALMNIQNALNQVGLGDSIKATVPLNADVYESPDSNNAVPSAGIFRPDLSELMTQIVQFLSKNNAPFTVNIYPFLSLYGNDNFPFDYAF FDGVSNPINDNGVLYTNVFDANFDTLVSALKSIGFGNMPIFVGEVGWPTDGDKNANIQNALRFYNGLLPRLASNKGTPRRQGYIEVYLFGLIDEDAKSIE PGNFERHWGIFSFDGKPKFPMH |
Full Sequence |
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Protein Sequence Length: 450 Download |
MGFYGYDDEY NFWYVEGLGV NWGTQATHPL KPDTVVQMLK DNGIQKVKLF DADEETMSAL 60 GGSGIEVMVA IPNNQLAEMS DYDRALQWVR KNVTRYNFKS GGVNIKYVAV GNEPFLKAYN 120 NSFLNVTFPA LMNIQNALNQ VGLGDSIKAT VPLNADVYES PDSNNAVPSA GIFRPDLSEL 180 MTQIVQFLSK NNAPFTVNIY PFLSLYGNDN FPFDYAFFDG VSNPINDNGV LYTNVFDANF 240 DTLVSALKSI GFGNMPIFVG EVGWPTDGDK NANIQNALRF YNGLLPRLAS NKGTPRRQGY 300 IEVYLFGLID EDAKSIEPGN FERHWGIFSF DGKPKFPMHV SNQHGQNKLL VGAKDVHYLD 360 PKWCMFNPNA NNLSNLADNI NYACTFADCT PLGYGSSCNN LDANGNASYA FNMYYQVQNQ 420 NDLACNFEGL AMLTTNNIST PTCVFYYSN* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG5309 | COG5309 | 1.0e-5 | 247 | 331 | 89 | + Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism] | ||
pfam07983 | X8 | 2.0e-18 | 362 | 432 | 81 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. | ||
smart00768 | X8 | 3.0e-32 | 362 | 445 | 86 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. | ||
pfam00332 | Glyco_hydro_17 | 8.0e-68 | 18 | 337 | 323 | + Glycosyl hydrolases family 17. |
Gene Ontology | |
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GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAQ90287.1 | 0 | 15 | 445 | 25 | 452 | beta-1,3-glucanase, acidic [Coffea arabica] |
GenBank | ABN09816.1 | 0 | 14 | 445 | 22 | 450 | Glycoside hydrolase, family 17; X8 [Medicago truncatula] |
RefSeq | XP_002277003.1 | 0 | 15 | 445 | 22 | 449 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002319699.1 | 0 | 15 | 445 | 20 | 449 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002525445.1 | 0 | 15 | 445 | 20 | 449 | Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3ur8_B | 0 | 18 | 338 | 3 | 312 | A Chain A, Characterization And Engineering Of The Bifunctional N- And O-glucosyltransferase Involved In Xenobiotic Metabolism In Plants |
PDB | 3ur8_A | 0 | 18 | 338 | 3 | 312 | A Chain A, Characterization And Engineering Of The Bifunctional N- And O-glucosyltransferase Involved In Xenobiotic Metabolism In Plants |
PDB | 3ur7_B | 0 | 18 | 338 | 3 | 312 | A Chain A, Higher-density Crystal Structure Of Potato Endo-1,3-beta-glucanase |
PDB | 3ur7_A | 0 | 18 | 338 | 3 | 312 | A Chain A, Higher-density Crystal Structure Of Potato Endo-1,3-beta-glucanase |
PDB | 3f55_D | 0 | 18 | 328 | 2 | 303 | A Chain A, Higher-density Crystal Structure Of Potato Endo-1,3-beta-glucanase |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
EY475288 | 248 | 198 | 445 | 0 |
HO797198 | 432 | 16 | 445 | 0 |
CA993350 | 300 | 146 | 445 | 0 |
GR410464 | 302 | 101 | 400 | 0 |
DV710304 | 294 | 152 | 445 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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