Basic Information | |
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Species | Panicum virgatum |
Cazyme ID | Pavirv00039130m |
Family | CBM43 |
Protein Properties | Length: 490 Molecular Weight: 53120.5 Isoelectric Point: 5.4243 |
Chromosome | Chromosome/Scaffold: 056010 Start: 952 End: 4700 |
Description | O-Glycosyl hydrolases family 17 protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CBM43 | 369 | 450 | 3.6e-26 |
WCVLKPSVSLNNPNLADNVGYACSMADCTSLGYKTSCGMLNLGGNVSYAFNNYYQKNDQDDVACGFQGLATTTGQDPSTGTC | |||
GH17 | 30 | 348 | 0 |
IGANWGTQTSHPLPPDTVVRMLKDNRFQKVKLFDAEEGTMNALKKSGLEVMVGIPNDMLLTMATNMKSAEKWVDTNVSSYLNDGVNIRYVAVGNEPFLET YNGSFLQTTYPAIRNIQSALIKAGLGNQVKVTCPLNADVYASPTTKPSDGDFRTDIHDLMIAIVKLLSDNGGAFTVNIYPFISLYIDPNFPMDYAFFEGA SSPIVDGSITYTNMFDANHDTLIWALKKNGYGNLPVIVGEIGWPTDGDRNANPQMAQRFNQGFMTHIASGRGTPMRPGPVDAYLFSLIDEDEKSIQPGNF ERHWGIFTYDGLPKYQLNF |
Full Sequence |
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Protein Sequence Length: 490 Download |
MGSGSGHGAA AVAVALVSWL CFASAGVGAI GANWGTQTSH PLPPDTVVRM LKDNRFQKVK 60 LFDAEEGTMN ALKKSGLEVM VGIPNDMLLT MATNMKSAEK WVDTNVSSYL NDGVNIRYVA 120 VGNEPFLETY NGSFLQTTYP AIRNIQSALI KAGLGNQVKV TCPLNADVYA SPTTKPSDGD 180 FRTDIHDLMI AIVKLLSDNG GAFTVNIYPF ISLYIDPNFP MDYAFFEGAS SPIVDGSITY 240 TNMFDANHDT LIWALKKNGY GNLPVIVGEI GWPTDGDRNA NPQMAQRFNQ GFMTHIASGR 300 GTPMRPGPVD AYLFSLIDED EKSIQPGNFE RHWGIFTYDG LPKYQLNFGT ANSGGLVKAK 360 GMKYLERKWC VLKPSVSLNN PNLADNVGYA CSMADCTSLG YKTSCGMLNL GGNVSYAFNN 420 YYQKNDQDDV ACGFQGLATT TGQDPSTGTC RFGIMIEVDS AFSLRLQRLG SNFLLMLLLV 480 LLQLCLSFS* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG5309 | COG5309 | 1.0e-5 | 261 | 339 | 82 | + Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism] | ||
pfam07983 | X8 | 2.0e-16 | 368 | 439 | 79 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. | ||
smart00768 | X8 | 2.0e-29 | 368 | 452 | 87 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. | ||
pfam00332 | Glyco_hydro_17 | 2.0e-74 | 30 | 348 | 321 | + Glycosyl hydrolases family 17. |
Gene Ontology | |
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GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | EAY84415.1 | 0 | 29 | 472 | 34 | 475 | hypothetical protein OsI_05789 [Oryza sativa Indica Group] |
RefSeq | NP_001045844.1 | 0 | 7 | 472 | 8 | 472 | Os02g0139300 [Oryza sativa (japonica cultivar-group)] |
RefSeq | NP_001151032.1 | 0 | 33 | 467 | 36 | 471 | glucan endo-1,3-beta-glucosidase 6 [Zea mays] |
RefSeq | NP_200617.2 | 0 | 29 | 457 | 21 | 450 | glycosyl hydrolase family 17 protein [Arabidopsis thaliana] |
RefSeq | XP_002530371.1 | 0 | 8 | 457 | 2 | 451 | Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 2cyg_A | 0 | 30 | 348 | 1 | 312 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
PDB | 1ghr_A | 0 | 30 | 348 | 1 | 306 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
PDB | 1aq0_B | 0 | 30 | 348 | 1 | 306 | A Chain A, Barley 1,3-1,4-Beta-Glucanase In Monoclinic Space Group |
PDB | 1aq0_A | 0 | 30 | 348 | 1 | 306 | A Chain A, Barley 1,3-1,4-Beta-Glucanase In Monoclinic Space Group |
PDB | 3f55_D | 0 | 30 | 348 | 2 | 315 | A Chain A, Barley 1,3-1,4-Beta-Glucanase In Monoclinic Space Group |