Basic Information | |
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Species | Populus trichocarpa |
Cazyme ID | Potri.006G002100.1 |
Family | CBM43 |
Protein Properties | Length: 486 Molecular Weight: 53262.9 Isoelectric Point: 7.1336 |
Chromosome | Chromosome/Scaffold: 06 Start: 180759 End: 183768 |
Description | O-Glycosyl hydrolases family 17 protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CBM43 | 368 | 447 | 3e-25 |
WCVADPSKDLTNVANHMRIACSVADCTTLDYGGSCNGIGAKGNISYAFNSYYQLQMQNAQSCDFDGLGMVTFLDPSVGDC | |||
GH17 | 29 | 347 | 0 |
IGVNWGTISFHRLKPSTVVDLLKDNKIKKVKLFDADPDALTALVGSGIEVMVGIPNEMLAVLSSSTDASDLWVRQNVSRYVVKGGADIRYVAVGNEPFLT SYSGQFQSFVVPALLNLQQSLVKANLAGYVKLVVPCNADAYESSLPSQGAFRPELTQIMTQLVSFLNSNGSPFVVNIYPFLSLYGNSDFPQDYAFFEGST HPVTDGSNVYYNAFDGNFDTLVSALNKLGYGQMPIVIGEVGWPTDGAFGANLSAARFFNQGLINHVLSNKGTPLRPRVPPVDIYLFSLLDEGAKSVLPGN FERHWGIFSFDGQAKYALN |
Full Sequence |
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Protein Sequence Length: 486 Download |
MSRLPRTLLY LVFVVILLSG SFPVGESAIG VNWGTISFHR LKPSTVVDLL KDNKIKKVKL 60 FDADPDALTA LVGSGIEVMV GIPNEMLAVL SSSTDASDLW VRQNVSRYVV KGGADIRYVA 120 VGNEPFLTSY SGQFQSFVVP ALLNLQQSLV KANLAGYVKL VVPCNADAYE SSLPSQGAFR 180 PELTQIMTQL VSFLNSNGSP FVVNIYPFLS LYGNSDFPQD YAFFEGSTHP VTDGSNVYYN 240 AFDGNFDTLV SALNKLGYGQ MPIVIGEVGW PTDGAFGANL SAARFFNQGL INHVLSNKGT 300 PLRPRVPPVD IYLFSLLDEG AKSVLPGNFE RHWGIFSFDG QAKYALNLGL GNRLLKNAKN 360 VEYLPSRWCV ADPSKDLTNV ANHMRIACSV ADCTTLDYGG SCNGIGAKGN ISYAFNSYYQ 420 LQMQNAQSCD FDGLGMVTFL DPSVGDCRFL VGVTDHKKSI AFRPTHRRTT IWTSILWWVW 480 FFLML* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG5309 | COG5309 | 0.0003 | 202 | 339 | 143 | + Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism] | ||
pfam07983 | X8 | 8.0e-18 | 367 | 436 | 77 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. | ||
smart00768 | X8 | 2.0e-30 | 368 | 449 | 84 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. | ||
pfam00332 | Glyco_hydro_17 | 1.0e-79 | 29 | 344 | 318 | + Glycosyl hydrolases family 17. |
Gene Ontology | |
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GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CAB10499.1 | 0 | 12 | 484 | 36 | 502 | glucanase like protein [Arabidopsis thaliana] |
RefSeq | NP_193451.2 | 0 | 12 | 484 | 9 | 475 | glycosyl hydrolase family 17 protein [Arabidopsis thaliana] |
RefSeq | XP_002307845.1 | 0 | 79 | 484 | 1 | 406 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002329964.1 | 0 | 1 | 485 | 1 | 485 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002525026.1 | 0 | 1 | 484 | 1 | 480 | Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1ghr_A | 0 | 29 | 348 | 1 | 306 | A Chain A, 3-D Structure Of Myosin-V Inhibited State |
PDB | 1aq0_B | 0 | 29 | 348 | 1 | 306 | A Chain A, Barley 1,3-1,4-Beta-Glucanase In Monoclinic Space Group |
PDB | 1aq0_A | 0 | 29 | 348 | 1 | 306 | A Chain A, Barley 1,3-1,4-Beta-Glucanase In Monoclinic Space Group |
PDB | 3f55_D | 0 | 29 | 348 | 2 | 315 | A Chain A, Barley 1,3-1,4-Beta-Glucanase In Monoclinic Space Group |
PDB | 3f55_C | 0 | 29 | 348 | 2 | 315 | A Chain A, Barley 1,3-1,4-Beta-Glucanase In Monoclinic Space Group |