Basic Information | |
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Species | Populus trichocarpa |
Cazyme ID | Potri.006G080600.1 |
Family | CBM43 |
Protein Properties | Length: 484 Molecular Weight: 52536.7 Isoelectric Point: 6.1032 |
Chromosome | Chromosome/Scaffold: 06 Start: 6083958 End: 6088695 |
Description | O-Glycosyl hydrolases family 17 protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CBM43 | 364 | 446 | 8.8e-25 |
WCVMKPSAKLDDPQVPLSVSYACGLADCTRLGYGTSCASLDSRGNISYAFNSYFQIQNQLDDACKFPNLSTITKTDPSTGTCK | |||
GH17 | 23 | 342 | 0 |
IGANWGTQATHPLDPSIVVRLLRENGIQKVKLFDADYDTLKALGKSGIEVMVGIPNDMLATLASSMKAAEKWVSKNVSAHVTSNNVNIRYVAVGNEPFLQ TYNGSFLRTTFPALQNVQSALIKAGLGNSVKVTVPLNADVYESSSGLPSDGDFRADIHDLMLAIVKFLNDATAPFTVNIYPFISLYSDADFPVDYAFFDG NANPVNDGGTSYYNMFDANYDTLVHALQKNGFGNLPIIVGEIGWPTDGDRNANIEYAQRFNQGFMSHISSGKGTPLKPNADINAYLFSLIDEDAKSVDPG NFERHWGVFTFDGMPKYAFN |
Full Sequence |
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Protein Sequence Length: 484 Download |
MRLYHVAIGL VSLLSTVSGA MTIGANWGTQ ATHPLDPSIV VRLLRENGIQ KVKLFDADYD 60 TLKALGKSGI EVMVGIPNDM LATLASSMKA AEKWVSKNVS AHVTSNNVNI RYVAVGNEPF 120 LQTYNGSFLR TTFPALQNVQ SALIKAGLGN SVKVTVPLNA DVYESSSGLP SDGDFRADIH 180 DLMLAIVKFL NDATAPFTVN IYPFISLYSD ADFPVDYAFF DGNANPVNDG GTSYYNMFDA 240 NYDTLVHALQ KNGFGNLPII VGEIGWPTDG DRNANIEYAQ RFNQGFMSHI SSGKGTPLKP 300 NADINAYLFS LIDEDAKSVD PGNFERHWGV FTFDGMPKYA FNLGTTNTGA LIPARRVNYL 360 ERKWCVMKPS AKLDDPQVPL SVSYACGLAD CTRLGYGTSC ASLDSRGNIS YAFNSYFQIQ 420 NQLDDACKFP NLSTITKTDP STGTCKFEVM IEPYYGGAVQ APGHAKKALG LVVGLILFFL 480 KIV* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG5309 | COG5309 | 0.0001 | 255 | 334 | 81 | + Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism] | ||
pfam07983 | X8 | 5.0e-12 | 363 | 434 | 79 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. | ||
smart00768 | X8 | 4.0e-28 | 363 | 447 | 87 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. | ||
pfam00332 | Glyco_hydro_17 | 4.0e-79 | 23 | 342 | 322 | + Glycosyl hydrolases family 17. |
Gene Ontology | |
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GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CBI38945.1 | 0 | 1 | 483 | 1 | 483 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002273826.1 | 0 | 1 | 483 | 83 | 565 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002309034.1 | 0 | 20 | 463 | 1 | 444 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002331390.1 | 0 | 10 | 460 | 1 | 451 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002530371.1 | 0 | 1 | 483 | 1 | 482 | Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1ghr_A | 0 | 23 | 331 | 1 | 294 | A Chain A, Barley 1,3-1,4-Beta-Glucanase In Monoclinic Space Group |
PDB | 1aq0_B | 0 | 23 | 331 | 1 | 294 | A Chain A, Barley 1,3-1,4-Beta-Glucanase In Monoclinic Space Group |
PDB | 1aq0_A | 0 | 23 | 331 | 1 | 294 | A Chain A, Barley 1,3-1,4-Beta-Glucanase In Monoclinic Space Group |
PDB | 3ur8_B | 0 | 23 | 343 | 3 | 314 | A Chain A, Barley 1,3-1,4-Beta-Glucanase In Monoclinic Space Group |
PDB | 3ur8_A | 0 | 23 | 343 | 3 | 314 | A Chain A, Barley 1,3-1,4-Beta-Glucanase In Monoclinic Space Group |