| Basic Information | |
|---|---|
| Species | Populus trichocarpa |
| Cazyme ID | Potri.006G280700.1 |
| Family | CBM43 |
| Protein Properties | Length: 517 Molecular Weight: 55940.4 Isoelectric Point: 5.6641 |
| Chromosome | Chromosome/Scaffold: 06 Start: 27862568 End: 27864558 |
| Description | O-Glycosyl hydrolases family 17 protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| CBM43 | 378 | 461 | 9e-23 |
| WCIMSPSASLDDPQVGPSVSYACANADCTSLGYGTSCENLDARGNISYAFNSYYQQNNQLESACKFPNNLSVVINNDPSTGTCK | |||
| GH17 | 38 | 356 | 0 |
| IGVNWGTQATHPLPPSTVVKMLRDNGFQKVKLFDADSATLNALANSGIQIMVGIPNDMLYNLANSEQAADTWVAKNVSSHISSGGADIRYVAVGNEPFLS SYNGSFLGTTLPALRNIQSALTKAGLSTRVKVTVPLNADVYESPTNLPSDGDFRSDIHDLMLSIVKFLSDNGAPFTVNIYPFISLYSDPNFPLGFAFFGN KSFPLNDGGTIYDNVFDANHDTLIWALQKNGYGSLPVVIGEIGWPTDGDKNANLNYAQQFNQGFMDSVISNKGTPLRPGYVDAYLFSLIDEDAKSIQPGN FERHWGLFYLDGQPKYAVS | |||
| Full Sequence |
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| Protein Sequence Length: 517 Download |
| MGGLIKGVVS TRQRQQPLVV TLRCLSILQL LVDSVSGIGV NWGTQATHPL PPSTVVKMLR 60 DNGFQKVKLF DADSATLNAL ANSGIQIMVG IPNDMLYNLA NSEQAADTWV AKNVSSHISS 120 GGADIRYVAV GNEPFLSSYN GSFLGTTLPA LRNIQSALTK AGLSTRVKVT VPLNADVYES 180 PTNLPSDGDF RSDIHDLMLS IVKFLSDNGA PFTVNIYPFI SLYSDPNFPL GFAFFGNKSF 240 PLNDGGTIYD NVFDANHDTL IWALQKNGYG SLPVVIGEIG WPTDGDKNAN LNYAQQFNQG 300 FMDSVISNKG TPLRPGYVDA YLFSLIDEDA KSIQPGNFER HWGLFYLDGQ PKYAVSLVTA 360 NSKGLVPARD VHYLARQWCI MSPSASLDDP QVGPSVSYAC ANADCTSLGY GTSCENLDAR 420 GNISYAFNSY YQQNNQLESA CKFPNNLSVV INNDPSTGTC KFRIMIQGQA VISGAGGGKG 480 FSRSSLVVFI LVFFPLYFCD FLGLKLKVYG LGFCDF* |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG5309 | COG5309 | 4.0e-5 | 270 | 348 | 80 | + Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism] | ||
| pfam07983 | X8 | 6.0e-13 | 377 | 443 | 74 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. | ||
| smart00768 | X8 | 2.0e-26 | 377 | 462 | 88 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. | ||
| pfam00332 | Glyco_hydro_17 | 6.0e-77 | 38 | 356 | 321 | + Glycosyl hydrolases family 17. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| RefSeq | NP_194843.1 | 0 | 4 | 491 | 2 | 476 | glycosyl hydrolase family 17 protein [Arabidopsis thaliana] |
| RefSeq | XP_002324127.1 | 0 | 3 | 498 | 2 | 502 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002330836.1 | 0 | 1 | 516 | 1 | 516 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002528007.1 | 0 | 24 | 496 | 17 | 487 | Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis] |
| RefSeq | XP_002530371.1 | 0 | 25 | 467 | 10 | 451 | Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 2cyg_A | 0 | 38 | 357 | 1 | 312 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
| PDB | 3f55_D | 0 | 38 | 353 | 2 | 311 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
| PDB | 3f55_C | 0 | 38 | 353 | 2 | 311 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
| PDB | 3f55_B | 0 | 38 | 353 | 2 | 311 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
| PDB | 3f55_A | 0 | 38 | 353 | 2 | 311 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
