| Basic Information | |
|---|---|
| Species | Populus trichocarpa |
| Cazyme ID | Potri.007G078900.1 |
| Family | CBM43 |
| Protein Properties | Length: 486 Molecular Weight: 53330.2 Isoelectric Point: 5.7616 |
| Chromosome | Chromosome/Scaffold: 07 Start: 10313559 End: 10315129 |
| Description | O-Glycosyl hydrolases family 17 protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| CBM43 | 372 | 452 | 4e-24 |
| WCVLNEENKNLSMIADEISYACSSADCTSLGYGSSCSKMDIDGNVSYAFNMYFQMQDQGDYACNFNGLAMIVKTNASRGNC | |||
| GH17 | 32 | 349 | 0 |
| IGVNWGTMASNPLPRNIVVNMLKDNGITKVKLFDSDSPTLKALAGTGIEVMVGIPNNQMSIVAGDIEDAEDWVKENITAYLHNGGVDIKYVAVGNEPFLS SYNNTYDNITFPALQNVQKALDKAGVGDKIKATVALNADVYESLSDKPSGGDFRKDIKDIMIQIIKFLHQNKAPFVVNIYPFLSLYQNAGFPFDYAFFDG GKTISDKNVSYSNVFDANYDTLVWTLKKNGVGDLKIIIGEVGWPTDGNFNANNKLAKKFYDGLLKKLVAEKGTPLRPGQLDLYLFGLIDENQKSIAPGHF ERHWGLFYYDGKPKFPID | |||
| Full Sequence |
|---|
| Protein Sequence Length: 486 Download |
| MARTGLLVWL YCLILASVNV VHVLSSTVLP GIGVNWGTMA SNPLPRNIVV NMLKDNGITK 60 VKLFDSDSPT LKALAGTGIE VMVGIPNNQM SIVAGDIEDA EDWVKENITA YLHNGGVDIK 120 YVAVGNEPFL SSYNNTYDNI TFPALQNVQK ALDKAGVGDK IKATVALNAD VYESLSDKPS 180 GGDFRKDIKD IMIQIIKFLH QNKAPFVVNI YPFLSLYQNA GFPFDYAFFD GGKTISDKNV 240 SYSNVFDANY DTLVWTLKKN GVGDLKIIIG EVGWPTDGNF NANNKLAKKF YDGLLKKLVA 300 EKGTPLRPGQ LDLYLFGLID ENQKSIAPGH FERHWGLFYY DGKPKFPIDL SGKGNDKMLI 360 AAKGVQYMSP RWCVLNEENK NLSMIADEIS YACSSADCTS LGYGSSCSKM DIDGNVSYAF 420 NMYFQMQDQG DYACNFNGLA MIVKTNASRG NCLFPLQLVG AGERLELAYG VRIIAGLMLA 480 FFSLM* |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam07983 | X8 | 2.0e-14 | 371 | 441 | 81 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. | ||
| smart00768 | X8 | 2.0e-28 | 372 | 454 | 85 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. | ||
| pfam00332 | Glyco_hydro_17 | 2.0e-71 | 32 | 349 | 320 | + Glycosyl hydrolases family 17. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAQ90287.1 | 0 | 31 | 485 | 27 | 478 | beta-1,3-glucanase, acidic [Coffea arabica] |
| EMBL | CAN62816.1 | 0 | 1 | 465 | 1 | 461 | hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002275701.1 | 0 | 1 | 465 | 1 | 461 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002310612.1 | 0 | 1 | 485 | 1 | 485 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002530257.1 | 0 | 5 | 464 | 6 | 461 | Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1ghr_A | 0 | 32 | 350 | 1 | 306 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 1aq0_B | 0 | 32 | 350 | 1 | 306 | A Chain A, Barley 1,3-1,4-Beta-Glucanase In Monoclinic Space Group |
| PDB | 1aq0_A | 0 | 32 | 350 | 1 | 306 | A Chain A, Barley 1,3-1,4-Beta-Glucanase In Monoclinic Space Group |
| PDB | 3f55_D | 0 | 32 | 351 | 2 | 316 | A Chain A, Barley 1,3-1,4-Beta-Glucanase In Monoclinic Space Group |
| PDB | 3f55_C | 0 | 32 | 351 | 2 | 316 | A Chain A, Barley 1,3-1,4-Beta-Glucanase In Monoclinic Space Group |
