Basic Information | |
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Species | Populus trichocarpa |
Cazyme ID | Potri.009G076500.1 |
Family | CBM43 |
Protein Properties | Length: 481 Molecular Weight: 52775.7 Isoelectric Point: 6.7868 |
Chromosome | Chromosome/Scaffold: 09 Start: 7421892 End: 7424952 |
Description | O-Glycosyl hydrolases family 17 protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CBM43 | 365 | 444 | 1.7e-24 |
WCVVNNNKDLSNATASALDACSTADCSALSPGGSCFNISWPANISYAFNNYYQVHDQRADSCDFGGLGLITTVDPSVGNC | |||
GH17 | 22 | 344 | 0 |
IGVNWGTTSSHPLPPDKVVELLKSNKITKVKLFDADPLVLQALSGSNIGVTVGIPNSMLKSLNSSKKVAESWVHDNVTRYVSSGNSGVRIEYVAVGDEPF QQSYGEQYHPFVIGAAMNIQTALARVSLANQVKVVVPCSYDTFQSESSLPSKGHFRPDLNKTMTELLTFLTKHHSPFFATISPFIISHRNKNISLDFSLF KETKHSRNDGHRTYKNSFDLGYDTLVSALSTAGFPEMDVVVAKIGWPTDGAANATPSAAETFMKGLMDHLHSKSGTPLRPRNPPIETYIFSLLDEDQRSI VNGNFERHWGVFTFDGQAKYNVD |
Full Sequence |
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Protein Sequence Length: 481 Download |
MLLNLSLFLL FLTASNITVQ AIGVNWGTTS SHPLPPDKVV ELLKSNKITK VKLFDADPLV 60 LQALSGSNIG VTVGIPNSML KSLNSSKKVA ESWVHDNVTR YVSSGNSGVR IEYVAVGDEP 120 FQQSYGEQYH PFVIGAAMNI QTALARVSLA NQVKVVVPCS YDTFQSESSL PSKGHFRPDL 180 NKTMTELLTF LTKHHSPFFA TISPFIISHR NKNISLDFSL FKETKHSRND GHRTYKNSFD 240 LGYDTLVSAL STAGFPEMDV VVAKIGWPTD GAANATPSAA ETFMKGLMDH LHSKSGTPLR 300 PRNPPIETYI FSLLDEDQRS IVNGNFERHW GVFTFDGQAK YNVDLGQGSK NLVNAQYVEY 360 LSSKWCVVNN NKDLSNATAS ALDACSTADC SALSPGGSCF NISWPANISY AFNNYYQVHD 420 QRADSCDFGG LGLITTVDPS VGNCRFPVEL RTSHSESLYG TCLLQWMILL TINTILHDFL 480 * |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG5309 | COG5309 | 0.0002 | 259 | 336 | 82 | + Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism] | ||
pfam07983 | X8 | 1.0e-14 | 364 | 432 | 80 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. | ||
smart00768 | X8 | 1.0e-29 | 364 | 446 | 86 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. | ||
pfam00332 | Glyco_hydro_17 | 1.0e-66 | 22 | 344 | 324 | + Glycosyl hydrolases family 17. |
Gene Ontology | |
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GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ABF95444.1 | 0 | 22 | 470 | 35 | 481 | Glycosyl hydrolases family 17 protein, expressed [Oryza sativa (japonica cultivar-group)] |
EMBL | CBI28434.1 | 0 | 21 | 476 | 22 | 478 | unnamed protein product [Vitis vinifera] |
RefSeq | NP_200656.2 | 0 | 12 | 466 | 16 | 464 | glycosyl hydrolase family 17 protein [Arabidopsis thaliana] |
RefSeq | XP_002269108.1 | 0 | 19 | 476 | 23 | 481 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002313970.1 | 0 | 1 | 480 | 1 | 480 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3f55_D | 0 | 22 | 345 | 2 | 315 | A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1 |
PDB | 3f55_C | 0 | 22 | 345 | 2 | 315 | A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1 |
PDB | 3f55_B | 0 | 22 | 345 | 2 | 315 | A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1 |
PDB | 3f55_A | 0 | 22 | 345 | 2 | 315 | A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1 |
PDB | 3em5_D | 0 | 22 | 345 | 2 | 315 | A Chain A, Crystal Structure Of A Native Endo Beta-1,3-Glucanase (Hev B 2), A Major Allergen From Hevea Brasiliensis |