Basic Information | |
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Species | Populus trichocarpa |
Cazyme ID | Potri.018G000900.1 |
Family | CBM43 |
Protein Properties | Length: 503 Molecular Weight: 53922.9 Isoelectric Point: 5.1365 |
Chromosome | Chromosome/Scaffold: 18 Start: 71710 End: 73551 |
Description | O-Glycosyl hydrolases family 17 protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CBM43 | 382 | 465 | 3.7e-22 |
WCIMSPSASLDDPQVAPSVSYACASADCTSLGYGTSCGDLSAQGNISYAFNSYYQQNNQLESACRFPNNLSVVTSNDPSTGTCK | |||
GH17 | 42 | 360 | 0 |
GVNWGTQATHPLPPSTVVNMLRDNGIQKVKLFDADSATLNAFANSGIQIMVGIPNDMLYTLANSEQAAENWVAKNVSSHISSGGVDIRYVAVGNEPFLST YNGSFLGTTLPALQNIHSALTKAGLDTRVKVTVPLNADVYESPTNIPSDGNFRKDIQDLMLSIVKFLSDNGAPFTVNIYPFISLYTTPNFPLGFAFFNNT SSSSLTDGGKIYDNVFDANHDTLVWALQKNGYGNLSIVIGEIGWPTDGDKNANLNYAQQFNQGFMNNVIAGKGTPMRPAPVDAYLFSLFDEDAKSIQPGN FERHWGLFYLDGQPKYALS |
Full Sequence |
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Protein Sequence Length: 503 Download |
MGLVKGVALS TRLRQQPLGL ALCCLYILQL LLLLLSSVSG TGVNWGTQAT HPLPPSTVVN 60 MLRDNGIQKV KLFDADSATL NAFANSGIQI MVGIPNDMLY TLANSEQAAE NWVAKNVSSH 120 ISSGGVDIRY VAVGNEPFLS TYNGSFLGTT LPALQNIHSA LTKAGLDTRV KVTVPLNADV 180 YESPTNIPSD GNFRKDIQDL MLSIVKFLSD NGAPFTVNIY PFISLYTTPN FPLGFAFFNN 240 TSSSSLTDGG KIYDNVFDAN HDTLVWALQK NGYGNLSIVI GEIGWPTDGD KNANLNYAQQ 300 FNQGFMNNVI AGKGTPMRPA PVDAYLFSLF DEDAKSIQPG NFERHWGLFY LDGQPKYALS 360 LGTTNSNGLV PARGVSYLAK KWCIMSPSAS LDDPQVAPSV SYACASADCT SLGYGTSCGD 420 LSAQGNISYA FNSYYQQNNQ LESACRFPNN LSVVTSNDPS TGTCKFMIMI QSQAVTSGVE 480 GGRGFSMSSF VTFAVAFLSA FL* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG5309 | COG5309 | 5.0e-5 | 274 | 352 | 80 | + Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism] | ||
pfam07983 | X8 | 7.0e-13 | 381 | 447 | 74 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. | ||
smart00768 | X8 | 3.0e-25 | 381 | 466 | 88 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. | ||
pfam00332 | Glyco_hydro_17 | 1.0e-76 | 42 | 360 | 321 | + Glycosyl hydrolases family 17. |
Gene Ontology | |
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GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | NP_194843.1 | 0 | 22 | 473 | 7 | 455 | glycosyl hydrolase family 17 protein [Arabidopsis thaliana] |
RefSeq | XP_002324127.1 | 0 | 1 | 502 | 1 | 502 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002330836.1 | 0 | 2 | 502 | 3 | 498 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002528007.1 | 0 | 19 | 497 | 12 | 485 | Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis] |
RefSeq | XP_002530371.1 | 0 | 20 | 471 | 1 | 451 | Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 2cyg_A | 0 | 42 | 361 | 2 | 312 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
PDB | 1ghr_A | 0 | 42 | 361 | 2 | 306 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
PDB | 1aq0_B | 0 | 42 | 361 | 2 | 306 | A Chain A, Barley 1,3-1,4-Beta-Glucanase In Monoclinic Space Group |
PDB | 1aq0_A | 0 | 42 | 361 | 2 | 306 | A Chain A, Barley 1,3-1,4-Beta-Glucanase In Monoclinic Space Group |
PDB | 3f55_D | 0 | 41 | 361 | 2 | 315 | A Chain A, Barley 1,3-1,4-Beta-Glucanase In Monoclinic Space Group |