Basic Information | |
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Species | Populus trichocarpa |
Cazyme ID | Potri.018G072300.1 |
Family | CBM43 |
Protein Properties | Length: 492 Molecular Weight: 54029.2 Isoelectric Point: 4.3396 |
Chromosome | Chromosome/Scaffold: 18 Start: 9372303 End: 9374354 |
Description | O-Glycosyl hydrolases family 17 protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CBM43 | 373 | 454 | 3.6e-26 |
WCVLDPEATELAELPDSIDYACSQSDCTALGYGSSCNHLSAEGNASYAFNMYYQLNNQGYWDCDFSGLALVTDKDPSEEDCQ | |||
GH17 | 29 | 350 | 0 |
VGVNWGTMATHQLAPDNVVQMLKENGFDKLKLFDADEKIMAALIGTDIEVMLAIPNYMLQEISQDPAAAAAWVDENVTSWSYTGGVKIRYVAVGNEPFLQ TYNGTYLHVTLPALKNIQHALNRAGLGSHVKATVPFNADIYNSPGSNPVPSAGDFRPDVRDLTIEVVQFLNENDAPFTVNIYPFLSLYGDPNFPLEFAFF DGPKKPITDGDSVYTNAFDANLDTLIWSLDKAGYPGMQIMIGEVGWPTDGDKNANIQNAKRFNQGLIRHALSGNGTPKRKGKNIDVYLFSLIDENAKAIA PGSFERHWGIFEFDGKPKYGLD |
Full Sequence |
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Protein Sequence Length: 492 Download |
MALAGVFTTY VLVPFVIFLT MIPDVTSRVG VNWGTMATHQ LAPDNVVQML KENGFDKLKL 60 FDADEKIMAA LIGTDIEVML AIPNYMLQEI SQDPAAAAAW VDENVTSWSY TGGVKIRYVA 120 VGNEPFLQTY NGTYLHVTLP ALKNIQHALN RAGLGSHVKA TVPFNADIYN SPGSNPVPSA 180 GDFRPDVRDL TIEVVQFLNE NDAPFTVNIY PFLSLYGDPN FPLEFAFFDG PKKPITDGDS 240 VYTNAFDANL DTLIWSLDKA GYPGMQIMIG EVGWPTDGDK NANIQNAKRF NQGLIRHALS 300 GNGTPKRKGK NIDVYLFSLI DENAKAIAPG SFERHWGIFE FDGKPKYGLD LMGLEEDKGL 360 APVEGVRYQL RRWCVLDPEA TELAELPDSI DYACSQSDCT ALGYGSSCNH LSAEGNASYA 420 FNMYYQLNNQ GYWDCDFSGL ALVTDKDPSE EDCQFPVMIA YGHSLVLNRN GLSDVLLGIV 480 VGNLLFLLLL S* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG5309 | COG5309 | 4.0e-7 | 267 | 342 | 80 | + Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism] | ||
pfam07983 | X8 | 4.0e-18 | 372 | 441 | 80 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. | ||
smart00768 | X8 | 3.0e-31 | 373 | 455 | 85 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. | ||
pfam00332 | Glyco_hydro_17 | 5.0e-80 | 29 | 350 | 323 | + Glycosyl hydrolases family 17. |
Gene Ontology | |
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GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CBI28113.1 | 0 | 1 | 487 | 519 | 975 | unnamed protein product [Vitis vinifera] |
RefSeq | NP_189076.1 | 0 | 26 | 489 | 36 | 497 | glycosyl hydrolase family 17 protein [Arabidopsis thaliana] |
RefSeq | XP_002281500.1 | 0 | 1 | 490 | 1 | 485 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002324967.1 | 0 | 21 | 470 | 1 | 450 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002515573.1 | 0 | 1 | 490 | 1 | 489 | Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 2cyg_A | 0 | 29 | 351 | 1 | 312 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
PDB | 3f55_D | 0 | 29 | 351 | 2 | 315 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
PDB | 3f55_C | 0 | 29 | 351 | 2 | 315 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
PDB | 3f55_B | 0 | 29 | 351 | 2 | 315 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
PDB | 3f55_A | 0 | 29 | 351 | 2 | 315 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
HO797198 | 434 | 27 | 459 | 0 |
EX345626 | 313 | 108 | 420 | 0 |
EX343142 | 311 | 145 | 455 | 0 |
GO360203 | 307 | 11 | 314 | 0 |
EX341879 | 295 | 130 | 424 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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