Basic Information | |
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Species | Populus trichocarpa |
Cazyme ID | Potri.018G150400.1 |
Family | CBM43 |
Protein Properties | Length: 483 Molecular Weight: 52395.6 Isoelectric Point: 6.399 |
Chromosome | Chromosome/Scaffold: 18 Start: 16818265 End: 16823062 |
Description | O-Glycosyl hydrolases family 17 protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CBM43 | 364 | 445 | 1.2e-24 |
WCVMKPSAKLDDPQVAPSVSYACGLADCTSLGYGTSCGNLDPRENISYAFNSYFQIQNQLGDACKFPNLSTITRTDPSTSTC | |||
GH17 | 23 | 342 | 0 |
IGANWGTQASHPLPPETVVRLLRENGIQKVKLFDADYDTLKVLGKTGIEVMVGIPNDLLASLAGSMKAAEKWVSRNVSAHVTNNNVNIRYVAVGNEPFLQ TYNGSFLRTTFPALQNVQSALIKAGLGNLIKVTVPLNADVYESSSGLPSGGDFRADIHDLMLTIVKFLNDAGAPFTVNIYPFISLYIDSNFPVEYAFFDG NANPVNDGGTSYYNMFDANYDTLVNALQKNGFGNLPIIVGEIGWPTDGDRNANVEYARRFNQGFMSHIASGKGTPMRPNAGINAYLFSLIDEDAKSIDPG NFERHWGIFTFDGIPKYSLN |
Full Sequence |
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Protein Sequence Length: 483 Download |
MGLYHLAIGL VSLLSMVSGA MTIGANWGTQ ASHPLPPETV VRLLRENGIQ KVKLFDADYD 60 TLKVLGKTGI EVMVGIPNDL LASLAGSMKA AEKWVSRNVS AHVTNNNVNI RYVAVGNEPF 120 LQTYNGSFLR TTFPALQNVQ SALIKAGLGN LIKVTVPLNA DVYESSSGLP SGGDFRADIH 180 DLMLTIVKFL NDAGAPFTVN IYPFISLYID SNFPVEYAFF DGNANPVNDG GTSYYNMFDA 240 NYDTLVNALQ KNGFGNLPII VGEIGWPTDG DRNANVEYAR RFNQGFMSHI ASGKGTPMRP 300 NAGINAYLFS LIDEDAKSID PGNFERHWGI FTFDGIPKYS LNLGTTNTGA LIPARSVHYL 360 ERKWCVMKPS AKLDDPQVAP SVSYACGLAD CTSLGYGTSC GNLDPRENIS YAFNSYFQIQ 420 NQLGDACKFP NLSTITRTDP STSTCRFAIM IEPYYGGAGQ TFRYGKKVAL GGLIALFFLT 480 IV* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG5309 | COG5309 | 1.0e-5 | 255 | 334 | 80 | + Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism] | ||
pfam07983 | X8 | 2.0e-15 | 363 | 434 | 79 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. | ||
smart00768 | X8 | 2.0e-29 | 363 | 447 | 87 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. | ||
pfam00332 | Glyco_hydro_17 | 3.0e-81 | 23 | 342 | 322 | + Glycosyl hydrolases family 17. |
Gene Ontology | |
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GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CBI38945.1 | 0 | 1 | 482 | 1 | 483 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002273826.1 | 0 | 1 | 482 | 83 | 565 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002309034.1 | 0 | 20 | 460 | 1 | 441 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002331390.1 | 0 | 10 | 460 | 1 | 451 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002530371.1 | 0 | 1 | 482 | 1 | 482 | Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1ghr_A | 0 | 23 | 331 | 1 | 294 | A Chain A, Crystal Structure Of A Beta-Galactosidase From Bacteroides Thetaiotaomicron |
PDB | 1aq0_B | 0 | 23 | 331 | 1 | 294 | A Chain A, Barley 1,3-1,4-Beta-Glucanase In Monoclinic Space Group |
PDB | 1aq0_A | 0 | 23 | 331 | 1 | 294 | A Chain A, Barley 1,3-1,4-Beta-Glucanase In Monoclinic Space Group |
PDB | 3f55_D | 0 | 23 | 343 | 2 | 315 | A Chain A, Barley 1,3-1,4-Beta-Glucanase In Monoclinic Space Group |
PDB | 3f55_C | 0 | 23 | 343 | 2 | 315 | A Chain A, Barley 1,3-1,4-Beta-Glucanase In Monoclinic Space Group |