| Basic Information | |
|---|---|
| Species | Populus trichocarpa |
| Cazyme ID | Potri.019G032900.1 |
| Family | CBM43 |
| Protein Properties | Length: 509 Molecular Weight: 55711.2 Isoelectric Point: 4.5436 |
| Chromosome | Chromosome/Scaffold: 19 Start: 3776352 End: 3780606 |
| Description | O-Glycosyl hydrolases family 17 protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
 | |||
| Family | Start | End | Evalue |
| CBM43 | 395 | 476 | 3.4e-25 |
| WCMFNPNAKDLSKLADNINYACSRSDCTALGYGSSCNGLDTNGNASYAFNMYYQVQNQDEFACNFEGLAMVTEQNISQGNCN | |||
| GH17 | 23 | 372 | 0 |
| LGVNWGTMAIRKLPPETVVQMLKDNGILKVKLFDADQNTMTSLAGTGIEVMVAIPNDQLAVMGDYNRAKDWVKRNVTRYDFDGGEFVVFVGGKICLPFLN KLVIMTSQGIINAVEKYVAVGNEPFLKSYNGSFLNTTFPALRNIQNALNDAGVGDSIKATVPFNADVYNSPDDQAYPSSGRFRSDINDIMTEMVQFLGQN NAPFTVNIYPFLSLYGNDDFPFDYAFFDGAPQPVVDRGTGIQYTNVFDANFDTLVSALKAAGHGDMPIIVGEVGWPTDGDKNANIGNAIRFYNGLLPRLA GNRGTPLRPGYIEVYLFGLLDEDAKSIAPGNFERHWGIFRYDGQPKFPMD | |||
| Full Sequence |
|---|
| Protein Sequence Length: 509 Download |
| MGTCWFLKLV LVLGLLRNCV DGLGVNWGTM AIRKLPPETV VQMLKDNGIL KVKLFDADQN 60 TMTSLAGTGI EVMVAIPNDQ LAVMGDYNRA KDWVKRNVTR YDFDGGEFVV FVGGKICLPF 120 LNKLVIMTSQ GIINAVEKYV AVGNEPFLKS YNGSFLNTTF PALRNIQNAL NDAGVGDSIK 180 ATVPFNADVY NSPDDQAYPS SGRFRSDIND IMTEMVQFLG QNNAPFTVNI YPFLSLYGND 240 DFPFDYAFFD GAPQPVVDRG TGIQYTNVFD ANFDTLVSAL KAAGHGDMPI IVGEVGWPTD 300 GDKNANIGNA IRFYNGLLPR LAGNRGTPLR PGYIEVYLFG LLDEDAKSIA PGNFERHWGI 360 FRYDGQPKFP MDLSGQVANK WLVGAQNVQY LPSKWCMFNP NAKDLSKLAD NINYACSRSD 420 CTALGYGSSC NGLDTNGNAS YAFNMYYQVQ NQDEFACNFE GLAMVTEQNI SQGNCNFTIQ 480 IVASSSSSLT LSLMGSVFVT ALLTSLFL* |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG5309 | COG5309 | 1.0e-5 | 280 | 364 | 89 | + Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism] | ||
| pfam07983 | X8 | 5.0e-18 | 394 | 464 | 81 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. | ||
| smart00768 | X8 | 4.0e-32 | 394 | 477 | 86 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. | ||
| pfam00332 | Glyco_hydro_17 | 4.0e-68 | 23 | 372 | 355 | + Glycosyl hydrolases family 17. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAQ90287.1 | 0 | 20 | 502 | 25 | 475 | beta-1,3-glucanase, acidic [Coffea arabica] |
| RefSeq | XP_002277003.1 | 0 | 5 | 481 | 6 | 453 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002319699.1 | 0 | 1 | 508 | 1 | 478 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002325410.1 | 0 | 1 | 508 | 1 | 508 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002525445.1 | 0 | 1 | 497 | 1 | 469 | Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3f55_D | 1.99965e-42 | 23 | 374 | 2 | 316 | B Chain B, The Avrptob-Bak1 Complex Reveals Two Structurally Similar Kinaseinteracting Domains In A Single Type Iii Effector |
| PDB | 3f55_C | 1.99965e-42 | 23 | 374 | 2 | 316 | B Chain B, The Avrptob-Bak1 Complex Reveals Two Structurally Similar Kinaseinteracting Domains In A Single Type Iii Effector |
| PDB | 3f55_B | 1.99965e-42 | 23 | 374 | 2 | 316 | B Chain B, The Avrptob-Bak1 Complex Reveals Two Structurally Similar Kinaseinteracting Domains In A Single Type Iii Effector |
| PDB | 3f55_A | 1.99965e-42 | 23 | 374 | 2 | 316 | B Chain B, The Avrptob-Bak1 Complex Reveals Two Structurally Similar Kinaseinteracting Domains In A Single Type Iii Effector |
| PDB | 3em5_D | 1.99965e-42 | 23 | 374 | 2 | 316 | A Chain A, Crystal Structure Of A Native Endo Beta-1,3-Glucanase (Hev B 2), A Major Allergen From Hevea Brasiliensis |
