Basic Information | |
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Species | Populus trichocarpa |
Cazyme ID | Potri.019G032900.2 |
Family | CBM43 |
Protein Properties | Length: 481 Molecular Weight: 52662.6 Isoelectric Point: 4.5137 |
Chromosome | Chromosome/Scaffold: 19 Start: 3776352 End: 3780606 |
Description | O-Glycosyl hydrolases family 17 protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CBM43 | 367 | 448 | 3.1e-25 |
WCMFNPNAKDLSKLADNINYACSRSDCTALGYGSSCNGLDTNGNASYAFNMYYQVQNQDEFACNFEGLAMVTEQNISQGNCN | |||
GH17 | 23 | 344 | 0 |
LGVNWGTMAIRKLPPETVVQMLKDNGILKVKLFDADQNTMTSLAGTGIEVMVAIPNDQLAVMGDYNRAKDWVKRNVTRYDFDGGVTIKYVAVGNEPFLKS YNGSFLNTTFPALRNIQNALNDAGVGDSIKATVPFNADVYNSPDDQAYPSSGRFRSDINDIMTEMVQFLGQNNAPFTVNIYPFLSLYGNDDFPFDYAFFD GAPQPVVDRGTGIQYTNVFDANFDTLVSALKAAGHGDMPIIVGEVGWPTDGDKNANIGNAIRFYNGLLPRLAGNRGTPLRPGYIEVYLFGLLDEDAKSIA PGNFERHWGIFRYDGQPKFPMD |
Full Sequence |
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Protein Sequence Length: 481 Download |
MGTCWFLKLV LVLGLLRNCV DGLGVNWGTM AIRKLPPETV VQMLKDNGIL KVKLFDADQN 60 TMTSLAGTGI EVMVAIPNDQ LAVMGDYNRA KDWVKRNVTR YDFDGGVTIK YVAVGNEPFL 120 KSYNGSFLNT TFPALRNIQN ALNDAGVGDS IKATVPFNAD VYNSPDDQAY PSSGRFRSDI 180 NDIMTEMVQF LGQNNAPFTV NIYPFLSLYG NDDFPFDYAF FDGAPQPVVD RGTGIQYTNV 240 FDANFDTLVS ALKAAGHGDM PIIVGEVGWP TDGDKNANIG NAIRFYNGLL PRLAGNRGTP 300 LRPGYIEVYL FGLLDEDAKS IAPGNFERHW GIFRYDGQPK FPMDLSGQVA NKWLVGAQNV 360 QYLPSKWCMF NPNAKDLSKL ADNINYACSR SDCTALGYGS SCNGLDTNGN ASYAFNMYYQ 420 VQNQDEFACN FEGLAMVTEQ NISQGNCNFT IQIVASSSSS LTLSLMGSVF VTALLTSLFL 480 * |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG5309 | COG5309 | 1.0e-5 | 252 | 336 | 89 | + Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism] | ||
pfam07983 | X8 | 7.0e-18 | 366 | 436 | 81 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. | ||
smart00768 | X8 | 4.0e-32 | 366 | 449 | 86 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. | ||
pfam00332 | Glyco_hydro_17 | 5.0e-73 | 23 | 344 | 327 | + Glycosyl hydrolases family 17. |
Gene Ontology | |
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GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAQ90287.1 | 0 | 20 | 474 | 25 | 475 | beta-1,3-glucanase, acidic [Coffea arabica] |
RefSeq | XP_002277003.1 | 0 | 5 | 453 | 6 | 453 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002319699.1 | 0 | 1 | 480 | 1 | 478 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002325410.1 | 0 | 1 | 480 | 1 | 508 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002525445.1 | 0 | 1 | 469 | 1 | 469 | Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3f55_D | 0 | 23 | 346 | 2 | 316 | A Chain A, Crystal Structure Of A Native Endo Beta-1,3-Glucanase (Hev B 2), A Major Allergen From Hevea Brasiliensis |
PDB | 3f55_C | 0 | 23 | 346 | 2 | 316 | A Chain A, Crystal Structure Of A Native Endo Beta-1,3-Glucanase (Hev B 2), A Major Allergen From Hevea Brasiliensis |
PDB | 3f55_B | 0 | 23 | 346 | 2 | 316 | A Chain A, Crystal Structure Of A Native Endo Beta-1,3-Glucanase (Hev B 2), A Major Allergen From Hevea Brasiliensis |
PDB | 3f55_A | 0 | 23 | 346 | 2 | 316 | A Chain A, Crystal Structure Of A Native Endo Beta-1,3-Glucanase (Hev B 2), A Major Allergen From Hevea Brasiliensis |
PDB | 3em5_D | 0 | 23 | 346 | 2 | 316 | A Chain A, Crystal Structure Of A Native Endo Beta-1,3-Glucanase (Hev B 2), A Major Allergen From Hevea Brasiliensis |