| Basic Information | |
|---|---|
| Species | Populus trichocarpa |
| Cazyme ID | Potri.019G032900.3 |
| Family | CBM43 |
| Protein Properties | Length: 380 Molecular Weight: 41470.4 Isoelectric Point: 4.2097 |
| Chromosome | Chromosome/Scaffold: 19 Start: 3779097 End: 3780606 |
| Description | O-Glycosyl hydrolases family 17 protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| CBM43 | 266 | 347 | 2.1e-25 |
| WCMFNPNAKDLSKLADNINYACSRSDCTALGYGSSCNGLDTNGNASYAFNMYYQVQNQDEFACNFEGLAMVTEQNISQGNCN | |||
| GH17 | 10 | 243 | 0 |
| YVAVGNEPFLKSYNGSFLNTTFPALRNIQNALNDAGVGDSIKATVPFNADVYNSPDDQAYPSSGRFRSDINDIMTEMVQFLGQNNAPFTVNIYPFLSLYG NDDFPFDYAFFDGAPQPVVDRGTGIQYTNVFDANFDTLVSALKAAGHGDMPIIVGEVGWPTDGDKNANIGNAIRFYNGLLPRLAGNRGTPLRPGYIEVYL FGLLDEDAKSIAPGNFERHWGIFRYDGQPKFPMD | |||
| Full Sequence |
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| Protein Sequence Length: 380 Download |
| MDLFLVCGVY VAVGNEPFLK SYNGSFLNTT FPALRNIQNA LNDAGVGDSI KATVPFNADV 60 YNSPDDQAYP SSGRFRSDIN DIMTEMVQFL GQNNAPFTVN IYPFLSLYGN DDFPFDYAFF 120 DGAPQPVVDR GTGIQYTNVF DANFDTLVSA LKAAGHGDMP IIVGEVGWPT DGDKNANIGN 180 AIRFYNGLLP RLAGNRGTPL RPGYIEVYLF GLLDEDAKSI APGNFERHWG IFRYDGQPKF 240 PMDLSGQVAN KWLVGAQNVQ YLPSKWCMFN PNAKDLSKLA DNINYACSRS DCTALGYGSS 300 CNGLDTNGNA SYAFNMYYQV QNQDEFACNF EGLAMVTEQN ISQGNCNFTI QIVASSSSSL 360 TLSLMGSVFV TALLTSLFL* |
| Functional Domains Download unfiltered results here | ||||||||
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG5309 | COG5309 | 1.0e-5 | 151 | 235 | 89 | + Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism] | ||
| pfam07983 | X8 | 1.0e-17 | 265 | 335 | 81 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. | ||
| smart00768 | X8 | 1.0e-31 | 265 | 348 | 86 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. | ||
| pfam00332 | Glyco_hydro_17 | 6.0e-50 | 10 | 243 | 238 | + Glycosyl hydrolases family 17. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAQ90287.1 | 0 | 10 | 373 | 116 | 475 | beta-1,3-glucanase, acidic [Coffea arabica] |
| RefSeq | XP_002277003.1 | 0 | 10 | 352 | 113 | 453 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002319699.1 | 0 | 10 | 379 | 111 | 478 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002325410.1 | 0 | 10 | 379 | 139 | 508 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002525445.1 | 0 | 10 | 368 | 111 | 469 | Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3f55_D | 6e-32 | 10 | 245 | 88 | 316 | A Chain A, Crystal Structure Of A Native Endo Beta-1,3-Glucanase (Hev B 2), A Major Allergen From Hevea Brasiliensis |
| PDB | 3f55_C | 6e-32 | 10 | 245 | 88 | 316 | A Chain A, Crystal Structure Of A Native Endo Beta-1,3-Glucanase (Hev B 2), A Major Allergen From Hevea Brasiliensis |
| PDB | 3f55_B | 6e-32 | 10 | 245 | 88 | 316 | A Chain A, Crystal Structure Of A Native Endo Beta-1,3-Glucanase (Hev B 2), A Major Allergen From Hevea Brasiliensis |
| PDB | 3f55_A | 6e-32 | 10 | 245 | 88 | 316 | A Chain A, Crystal Structure Of A Native Endo Beta-1,3-Glucanase (Hev B 2), A Major Allergen From Hevea Brasiliensis |
| PDB | 3em5_D | 6e-32 | 10 | 245 | 88 | 316 | A Chain A, Crystal Structure Of A Native Endo Beta-1,3-Glucanase (Hev B 2), A Major Allergen From Hevea Brasiliensis |
| Hydropathy |
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| EST Download unfiltered results here | ||||
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| Hit | Length | Start | End | EValue |
| DT518057 | 275 | 106 | 380 | 0 |
| DV709068 | 298 | 55 | 352 | 0 |
| CA993350 | 305 | 49 | 353 | 0 |
| DV708027 | 297 | 55 | 351 | 0 |
| DV710304 | 295 | 55 | 349 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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