| Basic Information | |
|---|---|
| Species | Sorghum bicolor |
| Cazyme ID | Sb10g022940.1 |
| Family | CBM43 |
| Protein Properties | Length: 493 Molecular Weight: 53792.7 Isoelectric Point: 6.2692 |
| Chromosome | Chromosome/Scaffold: 10 Start: 51274392 End: 51276038 |
| Description | O-Glycosyl hydrolases family 17 protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| CBM43 | 380 | 460 | 5.7e-23 |
| WCVFDDGAKDKSKLPGNLQYACASGDCTALGYGCSCNGLDEKSNISYAFNMYFQMQDQDVRACEFDGLAKITDKNASTRGC | |||
| GH17 | 41 | 357 | 0 |
| VGVNWGSQLSHPLLPDSVVKMLKKNGIARVKLFDADPWPVGALVDSGIEVMLGIPNDMLETMSSSYGNAQDWVNENVTSYGDKLKLKYVAVGNEPFLKAY NGSFMKTTFPALKNIQKALDEAGVGDKVKAVVPLNADVYVSPDDKPSSGAFRPDIDDLMTDMVKFLHDHGAPFVVNIYPFLSLYQSSNFPFEFAFFDGGK NINDKGGVNYDNVFDANYDTLVHALKKAGVPNLKVIVGEAGWPTDGNKNANLKLARRFYDGLLKKLAKNEGTPVRKGKMEVYLFGLFDEDMKSIAPGNFE RHWGIFTYDGKPKFPID | |||
| Full Sequence |
|---|
| Protein Sequence Length: 493 Download |
| MIRRQRGMAR FLQLLAGAAV LLLAASQPPA AMADDNNIVE VGVNWGSQLS HPLLPDSVVK 60 MLKKNGIARV KLFDADPWPV GALVDSGIEV MLGIPNDMLE TMSSSYGNAQ DWVNENVTSY 120 GDKLKLKYVA VGNEPFLKAY NGSFMKTTFP ALKNIQKALD EAGVGDKVKA VVPLNADVYV 180 SPDDKPSSGA FRPDIDDLMT DMVKFLHDHG APFVVNIYPF LSLYQSSNFP FEFAFFDGGK 240 NINDKGGVNY DNVFDANYDT LVHALKKAGV PNLKVIVGEA GWPTDGNKNA NLKLARRFYD 300 GLLKKLAKNE GTPVRKGKME VYLFGLFDED MKSIAPGNFE RHWGIFTYDG KPKFPIDLTG 360 QGHDKLLSPV TDVKYLPSQW CVFDDGAKDK SKLPGNLQYA CASGDCTALG YGCSCNGLDE 420 KSNISYAFNM YFQMQDQDVR ACEFDGLAKI TDKNASTRGC LFPVQIISAS GRPAPALLLL 480 APLLALVAML FV* 540 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG5309 | COG5309 | 0.0002 | 275 | 349 | 83 | + Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism] | ||
| pfam07983 | X8 | 6.0e-15 | 379 | 448 | 77 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. | ||
| smart00768 | X8 | 3.0e-28 | 379 | 462 | 86 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. | ||
| pfam00332 | Glyco_hydro_17 | 4.0e-73 | 41 | 357 | 319 | + Glycosyl hydrolases family 17. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ACR38156.1 | 0 | 1 | 468 | 1 | 465 | unknown [Zea mays] |
| GenBank | EAZ37505.1 | 0 | 35 | 465 | 27 | 456 | hypothetical protein OsJ_21839 [Oryza sativa Japonica Group] |
| RefSeq | NP_001057968.1 | 0 | 35 | 465 | 27 | 456 | Os06g0590600 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | XP_002275701.1 | 0 | 41 | 472 | 27 | 460 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002438620.1 | 0 | 1 | 472 | 1 | 472 | hypothetical protein SORBIDRAFT_10g022940 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3ur8_B | 0 | 41 | 359 | 3 | 315 | A Chain A, Bacillus Subtilis Pectate Lyase R279k Mutant |
| PDB | 3ur8_A | 0 | 41 | 359 | 3 | 315 | A Chain A, Bacillus Subtilis Pectate Lyase R279k Mutant |
| PDB | 3ur7_B | 0 | 41 | 359 | 3 | 315 | A Chain A, Higher-density Crystal Structure Of Potato Endo-1,3-beta-glucanase |
| PDB | 3ur7_A | 0 | 41 | 359 | 3 | 315 | A Chain A, Higher-density Crystal Structure Of Potato Endo-1,3-beta-glucanase |
| PDB | 4gzj_A | 0 | 41 | 359 | 3 | 315 | A Chain A, Higher-density Crystal Structure Of Potato Endo-1,3-beta-glucanase |
