Basic Information | |
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Species | Fragaria vesca |
Cazyme ID | mrna02065.1-v1.0-hybrid |
Family | CBM43 |
Protein Properties | Length: 490 Molecular Weight: 54178.2 Isoelectric Point: 4.6697 |
Chromosome | Chromosome/Scaffold: 1 Start: 5172743 End: 5174755 |
Description | O-Glycosyl hydrolases family 17 protein |
View CDS |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CBM43 | 373 | 454 | 1e-25 |
WCVLNPDAKDLYGLASSIDYACSLSDCTALGYGSSCNNLSLEGNASYAFNMYYQVNDQKIWTCDFSGLAVETDEDPSVGNCQ | |||
GH17 | 31 | 350 | 0 |
GVNWGTMATRQLPPEKVVQMLQENGFTKLKLFEADHKILDALVGTQIEVMLAIPNFMLQDMSIDTVAAISWVDANVSSYCYDGGVNIKYVAVGNEPFLKA YNGTYLKTTLPALKNIQEALNRFGLGSQVKVTVPFNADIYFSPDSDPVPSTGDFLPELKDHVIEIIQYLYTNEAPFTVNIYPFLSLYGNAYFPFEFAFFD GKSKPIRDGDLLYTNVFDANFDTLVWSLTKAGFPEIKIIVGEVGWPTDGVVNANIPNAKRFNQGMLKHALSGNGTPARKGMIDVYLFSLIDENAKSIAPG CFERHWGLFEFDGKPKYELD |
Full Sequence |
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Protein Sequence Length: 490 Download |
MAYEKVPKAK SFLVTMLLVL ALMAHKGSSF GVNWGTMATR QLPPEKVVQM LQENGFTKLK 60 LFEADHKILD ALVGTQIEVM LAIPNFMLQD MSIDTVAAIS WVDANVSSYC YDGGVNIKYV 120 AVGNEPFLKA YNGTYLKTTL PALKNIQEAL NRFGLGSQVK VTVPFNADIY FSPDSDPVPS 180 TGDFLPELKD HVIEIIQYLY TNEAPFTVNI YPFLSLYGNA YFPFEFAFFD GKSKPIRDGD 240 LLYTNVFDAN FDTLVWSLTK AGFPEIKIIV GEVGWPTDGV VNANIPNAKR FNQGMLKHAL 300 SGNGTPARKG MIDVYLFSLI DENAKSIAPG CFERHWGLFE FDGKPKYELD LSGSLQNKGL 360 VAVEGVDYMS KRWCVLNPDA KDLYGLASSI DYACSLSDCT ALGYGSSCNN LSLEGNASYA 420 FNMYYQVNDQ KIWTCDFSGL AVETDEDPSV GNCQFPVMIA YAPSLLQHRG LLHMLVEVIG 480 GCMLYWILL* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG5309 | COG5309 | 0.0002 | 266 | 342 | 82 | + Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism] | ||
pfam07983 | X8 | 3.0e-16 | 372 | 442 | 81 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. | ||
smart00768 | X8 | 2.0e-30 | 373 | 455 | 85 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. | ||
pfam00332 | Glyco_hydro_17 | 8.0e-71 | 31 | 350 | 322 | + Glycosyl hydrolases family 17. |
Gene Ontology | |
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GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005975 | carbohydrate metabolic process |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1ghr_A | 0 | 31 | 351 | 2 | 306 | A Chain A, Structure Of Apo-Glycogenin Truncated At Residue 270 |
PDB | 1aq0_B | 0 | 31 | 351 | 2 | 306 | A Chain A, Barley 1,3-1,4-Beta-Glucanase In Monoclinic Space Group |
PDB | 1aq0_A | 0 | 31 | 351 | 2 | 306 | A Chain A, Barley 1,3-1,4-Beta-Glucanase In Monoclinic Space Group |
PDB | 2cyg_A | 0 | 30 | 351 | 1 | 312 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
PDB | 3f55_D | 0 | 31 | 352 | 3 | 316 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |