Basic Information | |
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Species | Fragaria vesca |
Cazyme ID | mrna12970.1-v1.0-hybrid |
Family | CBM43 |
Protein Properties | Length: 672 Molecular Weight: 74089.1 Isoelectric Point: 6.5519 |
Chromosome | Chromosome/Scaffold: 1 Start: 6680143 End: 6684949 |
Description | O-Glycosyl hydrolases family 17 protein |
View CDS |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CBM43 | 364 | 442 | 1.8e-21 |
WCIMSPTASTSDPNLAGSINYACSYADCTSLGYGSSCGMLDARSNASYAFNMYYQTKDQRKDACQFSNLSITTNVDPSP | |||
GH17 | 28 | 344 | 0 |
CNWGTQATHPLPPTIVVKLLKDNGFSKVKLFEADPGALEALGNSGIQVMLGIPNEFLAALASTVTIAETWVYQNVSNYISKYGVDIRYIAVGNEPFLKTY KDTFLKTTFPALQNIQAALIKAGLGRQVKVTVPLNADVYQTDTGLPSGGDFRSDIHSLVLSIIKFLSDNGGALTINIYPFLSLQADPDFPKEYAFFDNGA KPVVDGSISYTNVLDANFDTCIAALEKNGFPSLPVIVGEIGWPTDGDPNANVEDARRFNQGLLGRIVAGQGTPKRSTPPDIYIFGLIDEDAKSVQPGNFE RHWGVFNYDGSLKYFLD |
Full Sequence |
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Protein Sequence Length: 672 Download |
MGFRYLYVLL LCLFSEGLLR GVHGGFACNW GTQATHPLPP TIVVKLLKDN GFSKVKLFEA 60 DPGALEALGN SGIQVMLGIP NEFLAALAST VTIAETWVYQ NVSNYISKYG VDIRYIAVGN 120 EPFLKTYKDT FLKTTFPALQ NIQAALIKAG LGRQVKVTVP LNADVYQTDT GLPSGGDFRS 180 DIHSLVLSII KFLSDNGGAL TINIYPFLSL QADPDFPKEY AFFDNGAKPV VDGSISYTNV 240 LDANFDTCIA ALEKNGFPSL PVIVGEIGWP TDGDPNANVE DARRFNQGLL GRIVAGQGTP 300 KRSTPPDIYI FGLIDEDAKS VQPGNFERHW GVFNYDGSLK YFLDIGNGKA MVAAKGVQYL 360 ARQWCIMSPT ASTSDPNLAG SINYACSYAD CTSLGYGSSC GMLDARSNAS YAFNMYYQTK 420 DQRKDACQFS NLSITTNVDP SPTSSGQNTT CRFEIMIDLS KHQKAPRRPP SSVAAGLILG 480 NFVSALNRFI ADRYAANHSV SEYHVYEFFK IWNCSRDEAD LRVHEFFKTP YFKTGIHPLP 540 GAKETLHKLS GFCNLSVVTS RQNAIKDHTI QWIESHFPGL FQEIHFGNHF ALHGESRPKS 600 EICRSLGATV LIDDNPRYAL ECAEVGIRVL LFDFENSYPW CKTDSVDLHP LVTKVHNWEA 660 VEKQLMAWVT S* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG5309 | COG5309 | 6.0e-6 | 261 | 336 | 80 | + Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism] | ||
pfam06941 | NT5C | 3.0e-7 | 478 | 666 | 197 | + 5' nucleotidase, deoxy (Pyrimidine), cytosolic type C protein (NT5C). This family consists of several 5' nucleotidase, deoxy (Pyrimidine), cytosolic type C (NT5C) proteins. 5'(3')-Deoxyribonucleotidase is a ubiquitous enzyme in mammalian cells whose physiological function is not known. | ||
pfam07983 | X8 | 2.0e-15 | 363 | 432 | 77 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. | ||
smart00768 | X8 | 1.0e-24 | 363 | 453 | 93 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. | ||
pfam00332 | Glyco_hydro_17 | 6.0e-73 | 29 | 344 | 318 | + Glycosyl hydrolases family 17. |
Gene Ontology | |
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GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005515 | protein binding |
GO:0005975 | carbohydrate metabolic process |
GO:0016791 | phosphatase activity |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 2cyg_A | 9.80909e-45 | 30 | 333 | 5 | 300 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
PDB | 3f55_D | 2.00386e-43 | 30 | 344 | 6 | 314 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
PDB | 3f55_C | 2.00386e-43 | 30 | 344 | 6 | 314 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
PDB | 3f55_B | 2.00386e-43 | 30 | 344 | 6 | 314 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
PDB | 3f55_A | 2.00386e-43 | 30 | 344 | 6 | 314 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |