Basic Information | |
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Species | Fragaria vesca |
Cazyme ID | mrna21072.1-v1.0-hybrid |
Family | CBM43 |
Protein Properties | Length: 487 Molecular Weight: 53122.3 Isoelectric Point: 4.4209 |
Chromosome | Chromosome/Scaffold: 1 Start: 9853539 End: 9855626 |
Description | O-Glycosyl hydrolases family 17 protein |
View CDS |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CBM43 | 373 | 454 | 8.5e-25 |
WCMFNPNAKDLSKLADNINYACTFADCTALEYGSSCNILDANGNASYAFNMYYQVQNQDDLSCNFEGLATVTTQNISQGTCN | |||
GH17 | 29 | 350 | 0 |
LGVNWGTMATHKLPPDTVVQLLKDNGIQKVKLFDAEQSTMSALAGTSIEVMVAIPNDQLQAMTSYPRAKEWVRRNVTRYNFNGGVNIKYVAVGNEPFLTS YNGSFLNITFPALQNIQNALNEAGVGDTIKATVPLNADVYNSPETNPVPSAGTFRSDISQLMTEIVQFLDKNKAPFTINIYPFLSLYGNDDFPFNYAFFD GDATPIVDATTGIQYTNVFDANFDTLVSSLKAVGYGDMAIVVGEVGWPTDGDKNANVGNAYRFYNGLLARLAANKGTPLRPGFIEIYLFGLIDEDAKSIA PGSFERHWGIFSYDGQPKFPID |
Full Sequence |
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Protein Sequence Length: 487 Download |
MERGYVMMML VCVVMVVLGC WSGDGVEGLG VNWGTMATHK LPPDTVVQLL KDNGIQKVKL 60 FDAEQSTMSA LAGTSIEVMV AIPNDQLQAM TSYPRAKEWV RRNVTRYNFN GGVNIKYVAV 120 GNEPFLTSYN GSFLNITFPA LQNIQNALNE AGVGDTIKAT VPLNADVYNS PETNPVPSAG 180 TFRSDISQLM TEIVQFLDKN KAPFTINIYP FLSLYGNDDF PFNYAFFDGD ATPIVDATTG 240 IQYTNVFDAN FDTLVSSLKA VGYGDMAIVV GEVGWPTDGD KNANVGNAYR FYNGLLARLA 300 ANKGTPLRPG FIEIYLFGLI DEDAKSIAPG SFERHWGIFS YDGQPKFPID VSGQGQNKLL 360 MGAKNVQYLE KKWCMFNPNA KDLSKLADNI NYACTFADCT ALEYGSSCNI LDANGNASYA 420 FNMYYQVQNQ DDLSCNFEGL ATVTTQNISQ GTCNFIIQIA SSSTFSLRPS PLVGIVLGVL 480 FSILLL* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG5309 | COG5309 | 2.0e-6 | 210 | 342 | 137 | + Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism] | ||
pfam07983 | X8 | 7.0e-18 | 372 | 442 | 78 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. | ||
smart00768 | X8 | 1.0e-31 | 372 | 455 | 86 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. | ||
pfam00332 | Glyco_hydro_17 | 4.0e-78 | 29 | 350 | 325 | + Glycosyl hydrolases family 17. |
Gene Ontology | |
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GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005975 | carbohydrate metabolic process |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3f55_D | 0 | 29 | 352 | 2 | 316 | A Chain A, Recombinant Horseradish Peroxidase Phe209ser Complex With Benzhydroxamic Acid |
PDB | 3f55_C | 0 | 29 | 352 | 2 | 316 | A Chain A, Recombinant Horseradish Peroxidase Phe209ser Complex With Benzhydroxamic Acid |
PDB | 3f55_B | 0 | 29 | 352 | 2 | 316 | A Chain A, Recombinant Horseradish Peroxidase Phe209ser Complex With Benzhydroxamic Acid |
PDB | 3f55_A | 0 | 29 | 352 | 2 | 316 | A Chain A, Recombinant Horseradish Peroxidase Phe209ser Complex With Benzhydroxamic Acid |
PDB | 3em5_D | 0 | 29 | 352 | 2 | 316 | A Chain A, Crystal Structure Of A Native Endo Beta-1,3-Glucanase (Hev B 2), A Major Allergen From Hevea Brasiliensis |