Basic Information | |
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Species | Fragaria vesca |
Cazyme ID | mrna21133.1-v1.0-hybrid |
Family | CBM43 |
Protein Properties | Length: 480 Molecular Weight: 52874.4 Isoelectric Point: 6.5219 |
Chromosome | Chromosome/Scaffold: 1 Start: 17059977 End: 17061550 |
Description | O-Glycosyl hydrolases family 17 protein |
View CDS |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CBM43 | 367 | 447 | 1.7e-22 |
WCVLNSDVRNLSKAMKEKDYACSNADCTSIKNSSSCSFLEPSDQVSYAFNSFYQSRNQSVEACNFNGMGTKVTQDPSKGDC | |||
GH17 | 25 | 344 | 0 |
GINWGSMMTHPLPPKKVVAMLKENGFKKVKLFDAEPSMMDALAGSGLEVMVGIPNDKLSELASDYGSAKAWVKHNVTSYLYDGGVAIKYVAVGNEPFLSS YNGSYVKTTYPAMKNIQKALYDSSQEVGSKIKVTTPFNADVYHSKSDKPTDGEFRQNIRDSMVQILGLLKQAKSPFLVNIYPFLSLSQNTDFPREFAFFD GGGKGVDDGNIHYDNVFDANLDTAHYALKKEGYSDLEIIIGEVGWPTDGGRDANVKLAQKFYDGLFKKLAKGQGSPLRKGSVEVYLFGLFDENSKSIAPG DFERHWGIFRYDGQPKFPMD |
Full Sequence |
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Protein Sequence Length: 480 Download |
MARAAVLVWL LSMMLVSIDI AQGYGINWGS MMTHPLPPKK VVAMLKENGF KKVKLFDAEP 60 SMMDALAGSG LEVMVGIPND KLSELASDYG SAKAWVKHNV TSYLYDGGVA IKYVAVGNEP 120 FLSSYNGSYV KTTYPAMKNI QKALYDSSQE VGSKIKVTTP FNADVYHSKS DKPTDGEFRQ 180 NIRDSMVQIL GLLKQAKSPF LVNIYPFLSL SQNTDFPREF AFFDGGGKGV DDGNIHYDNV 240 FDANLDTAHY ALKKEGYSDL EIIIGEVGWP TDGGRDANVK LAQKFYDGLF KKLAKGQGSP 300 LRKGSVEVYL FGLFDENSKS IAPGDFERHW GIFRYDGQPK FPMDISGKGQ NQMLKPVKGV 360 EMLDKQWCVL NSDVRNLSKA MKEKDYACSN ADCTSIKNSS SCSFLEPSDQ VSYAFNSFYQ 420 SRNQSVEACN FNGMGTKVTQ DPSKGDCLFP LQIESSATDL VALSLSTGLL LLMSFFILM* 480 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG5309 | COG5309 | 0.0003 | 262 | 336 | 79 | + Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism] | ||
pfam07983 | X8 | 2.0e-13 | 366 | 436 | 80 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. | ||
smart00768 | X8 | 2.0e-24 | 366 | 449 | 88 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. | ||
pfam00332 | Glyco_hydro_17 | 5.0e-73 | 25 | 344 | 322 | + Glycosyl hydrolases family 17. |
Gene Ontology | |
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GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005975 | carbohydrate metabolic process |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3ur8_B | 0 | 22 | 346 | 1 | 315 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 3ur8_A | 0 | 22 | 346 | 1 | 315 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 3ur7_B | 0 | 22 | 346 | 1 | 315 | A Chain A, Higher-density Crystal Structure Of Potato Endo-1,3-beta-glucanase |
PDB | 3ur7_A | 0 | 22 | 346 | 1 | 315 | A Chain A, Higher-density Crystal Structure Of Potato Endo-1,3-beta-glucanase |
PDB | 4gzj_A | 0 | 22 | 346 | 1 | 315 | A Chain A, Higher-density Crystal Structure Of Potato Endo-1,3-beta-glucanase |