Basic Information | |
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Species | Fragaria vesca |
Cazyme ID | mrna29858.1-v1.0-hybrid |
Family | CBM43 |
Protein Properties | Length: 470 Molecular Weight: 51114.1 Isoelectric Point: 5.4037 |
Chromosome | Chromosome/Scaffold: 4 Start: 1292016 End: 1294739 |
Description | O-Glycosyl hydrolases family 17 protein |
View CDS |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CBM43 | 348 | 429 | 1.1e-24 |
WCVMRPSASLDDPQVALSMSYACGLADCTSLGYGTSCGNLDARGNISYAFNSYYQMNNQLDVACKFPNLSMITKTNPSVGSC | |||
GH17 | 8 | 326 | 0 |
IGANWGTQASHPLPPDSVVSLLRQNGIQKVKLFDADYDTLTNLGKSGIEVMVGIPNDMLASLASSVKAAEKWVSKNVSAHISSNNVKIRYVAVGNEPFLE TYNGSFLRTIFPALKNVQSALIKAGISNQVKVTVPQNADVYESSNGLPSGGDFRTEIHDLMLQIIKFLSDNGAPFTVNIYPFISLYIDANFPVDYAFFDG NASPITDGSLTYYNMFDANYDTLAWALQKNGFGNLPIIVGEIGWPTDGDQNANLVYAQKFNQGFMSHILSGRGTPMRPGPIDAYLFSLIDEDSKSIDPGN FERHWGIFTFDGIPKYQLN |
Full Sequence |
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Protein Sequence Length: 470 Download |
MCGVVSGIGA NWGTQASHPL PPDSVVSLLR QNGIQKVKLF DADYDTLTNL GKSGIEVMVG 60 IPNDMLASLA SSVKAAEKWV SKNVSAHISS NNVKIRYVAV GNEPFLETYN GSFLRTIFPA 120 LKNVQSALIK AGISNQVKVT VPQNADVYES SNGLPSGGDF RTEIHDLMLQ IIKFLSDNGA 180 PFTVNIYPFI SLYIDANFPV DYAFFDGNAS PITDGSLTYY NMFDANYDTL AWALQKNGFG 240 NLPIIVGEIG WPTDGDQNAN LVYAQKFNQG FMSHILSGRG TPMRPGPIDA YLFSLIDEDS 300 KSIDPGNFER HWGIFTFDGI PKYQLNLGTT NSGSVVAAKG VHYLERKWCV MRPSASLDDP 360 QVALSMSYAC GLADCTSLGY GTSCGNLDAR GNISYAFNSY YQMNNQLDVA CKFPNLSMIT 420 KTNPSVGSCR FEIMIEPYYG GAGSERRLGI LQRPLSLAAV LILVWQSIM* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG5309 | COG5309 | 5.0e-7 | 36 | 318 | 293 | + Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism] | ||
pfam07983 | X8 | 8.0e-15 | 347 | 413 | 74 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. | ||
smart00768 | X8 | 3.0e-30 | 347 | 431 | 87 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. | ||
pfam00332 | Glyco_hydro_17 | 6.0e-77 | 8 | 326 | 322 | + Glycosyl hydrolases family 17. |
Gene Ontology | |
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GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005975 | carbohydrate metabolic process |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1ghr_A | 0 | 8 | 315 | 1 | 294 | B Chain B, The Structural Basis Of Cdk2 Activation By Cyclin E |
PDB | 1aq0_B | 0 | 8 | 315 | 1 | 294 | A Chain A, Barley 1,3-1,4-Beta-Glucanase In Monoclinic Space Group |
PDB | 1aq0_A | 0 | 8 | 315 | 1 | 294 | A Chain A, Barley 1,3-1,4-Beta-Glucanase In Monoclinic Space Group |
PDB | 2cyg_A | 0 | 8 | 327 | 1 | 312 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
PDB | 3ur8_B | 0 | 8 | 327 | 3 | 314 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
Sequence Alignments (This image is cropped. Click for full image.) |
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