| Basic Information | |
|---|---|
| Species | Citrus sinensis |
| Cazyme ID | orange1.1g042447m |
| Family | GH28 |
| Protein Properties | Length: 356 Molecular Weight: 38210.1 Isoelectric Point: 4.9836 |
| Chromosome | Chromosome/Scaffold: 00003 Start: 1714675 End: 1717889 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
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| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| GH28 | 65 | 261 | 0 |
| NTACSTPKSVFLVPAGRHYLVSATRFKGPCADKLVIQIDGTIVAPAEPDNWDPKLARIWLDFSKLNGVLFQGSGVIDGSGSKWWASSCKKNKSESVRVYQ VLVSAPEDSPNTDGIHITESTNVVLQDCKIGTGDDCISIVNGSSAIKMKRIFCGPGHGISIGSLGKDNSMGIVTKVVLDTAYLRETANGLRIKTWQT | |||
| Full Sequence |
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| Protein Sequence Length: 356 Download |
| MVHDNIALLG ELENLNVEEE NEVELFEEPS WTSERGGKVL VNVDSFGAAG DGVSDDTQAF 60 LNAWNTACST PKSVFLVPAG RHYLVSATRF KGPCADKLVI QIDGTIVAPA EPDNWDPKLA 120 RIWLDFSKLN GVLFQGSGVI DGSGSKWWAS SCKKNKSESV RVYQVLVSAP EDSPNTDGIH 180 ITESTNVVLQ DCKIGTGDDC ISIVNGSSAI KMKRIFCGPG HGISIGSLGK DNSMGIVTKV 240 VLDTAYLRET ANGLRIKTWQ TSAVKISQIM YRNISGTTKS SKAMKFACSD TVPCSDIVLS 300 NVNLEKKDGT VETYCNSAQG IGYGIVHPSA DCLTSNDKDA KLAEPTRNEI VHTEL* 360 |
| Functional Domains Download unfiltered results here | ||||||||
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02188 | PLN02188 | 1.0e-59 | 40 | 309 | 348 | + polygalacturonase/glycoside hydrolase family protein | ||
| PLN03010 | PLN03010 | 3.0e-62 | 42 | 309 | 332 | + polygalacturonase | ||
| PLN03003 | PLN03003 | 1.0e-64 | 41 | 333 | 369 | + Probable polygalacturonase At3g15720 | ||
| PLN02218 | PLN02218 | 2.0e-70 | 41 | 328 | 367 | + polygalacturonase ADPG | ||
| PLN02793 | PLN02793 | 4.0e-95 | 29 | 336 | 387 | + Probable polygalacturonase | ||
| Gene Ontology | |
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| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CBI28554.1 | 0 | 2 | 355 | 673 | 1111 | unnamed protein product [Vitis vinifera] |
| RefSeq | NP_173760.2 | 0 | 1 | 353 | 25 | 455 | polygalacturonase [Arabidopsis thaliana] |
| RefSeq | XP_002299032.1 | 0 | 1 | 355 | 23 | 469 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002317091.1 | 0 | 8 | 355 | 1 | 447 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002328587.1 | 0 | 1 | 344 | 23 | 444 | predicted protein [Populus trichocarpa] |
| Annotations - PDB Download unfiltered results here | |||||||
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| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1rmg_A | 0.0000000000008 | 33 | 323 | 13 | 358 | A Chain A, Rhamnogalacturonase A From Aspergillus Aculeatus |
| PDB | 1nhc_F | 0.00000000002 | 77 | 312 | 28 | 293 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_E | 0.00000000002 | 77 | 312 | 28 | 293 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_D | 0.00000000002 | 77 | 312 | 28 | 293 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_C | 0.00000000002 | 77 | 312 | 28 | 293 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| Hydropathy |
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| EST Download unfiltered results here | ||||
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| Hit | Length | Start | End | EValue |
| FE686036 | 251 | 29 | 241 | 0 |
| EV550328 | 222 | 77 | 260 | 0 |
| CA929934 | 207 | 92 | 260 | 0 |
| EV271942 | 218 | 54 | 233 | 0 |
| EY718419 | 212 | 1 | 174 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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| Phylogeny |
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