| Basic Information | |
|---|---|
| Species | Aquilegia coerulea |
| Cazyme ID | Aquca_015_00267.1 |
| Family | GH28 |
| Protein Properties | Length: 106 Molecular Weight: 11258.7 Isoelectric Point: 4.5638 |
| Chromosome | Chromosome/Scaffold: 15 Start: 2254141 End: 2254939 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
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| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 2 | 94 | 2.2e-27 |
| TFKDIVMNNVSNPIIIDQTYCPYSSCSSLVPSRVKLSDIFFQNIKGTSSSNVAVTLECSEGAPCQNVNLEDVHLDLSGGGNVAKSLCQNVQAK | |||
| Full Sequence |
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| Protein Sequence Length: 106 Download |
| MTFKDIVMNN VSNPIIIDQT YCPYSSCSSL VPSRVKLSDI FFQNIKGTSS SNVAVTLECS 60 EGAPCQNVNL EDVHLDLSGG GNVAKSLCQN VQAKYSGTQI PPPCE* |
| Functional Domains Download unfiltered results here | ||||||
|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description |
| PLN02218 | PLN02218 | 3.0e-18 | 1 | 101 | 101 | + polygalacturonase ADPG |
| PLN02155 | PLN02155 | 1.0e-18 | 3 | 104 | 102 | + polygalacturonase |
| pfam00295 | Glyco_hydro_28 | 3.0e-23 | 1 | 91 | 91 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. |
| PLN02793 | PLN02793 | 3.0e-24 | 1 | 104 | 109 | + Probable polygalacturonase |
| PLN02188 | PLN02188 | 1.0e-53 | 1 | 104 | 104 | + polygalacturonase/glycoside hydrolase family protein |
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CAA16789.1 | 3e-39 | 1 | 105 | 247 | 362 | polygalacturonase-like protein [Arabidopsis thaliana] |
| EMBL | CBI37725.1 | 0 | 1 | 104 | 284 | 387 | unnamed protein product [Vitis vinifera] |
| RefSeq | NP_193552.1 | 4e-39 | 1 | 105 | 299 | 414 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
| RefSeq | XP_002279959.1 | 0 | 1 | 104 | 316 | 419 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002312795.1 | 9.94922e-44 | 1 | 104 | 306 | 409 | predicted protein [Populus trichocarpa] |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| DR944704 | 105 | 1 | 105 | 3.00018e-42 |
| DT736436 | 105 | 1 | 105 | 9e-38 |
| DR938457 | 105 | 1 | 105 | 1e-37 |
| DT761079 | 105 | 1 | 105 | 1e-37 |
| EC944260 | 104 | 1 | 104 | 7e-33 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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| Phylogeny |
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